Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B02
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 170 1e-42
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 170 1e-42
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 169 2e-42
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.6
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 28 6.3
At2g37720.1 68415.m04625 expressed protein 28 6.3
At1g71400.1 68414.m08246 disease resistance family protein / LRR... 28 6.3
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 8.3
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 170 bits (413), Expect = 1e-42
Identities = 85/165 (51%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Frame = -2
Query: 769 KXAHIMESNLXGYHRGQS-EMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVTSR 593
K AH+ME + G Q + + F + + + + K + + + KGKGY+GV +R
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGKGYEGVVTR 235
Query: 592 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 413
W +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----K 290
Query: 412 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 291 VG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 114 K 112
K
Sbjct: 389 K 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 170 bits (413), Expect = 1e-42
Identities = 85/165 (51%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
Frame = -2
Query: 769 KXAHIMESNLXGYHRGQS-EMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVTSR 593
K AH+ME + G Q + + F + + + + K + + + KGKGY+GV +R
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGKGYEGVVTR 235
Query: 592 WHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 413
W +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K
Sbjct: 236 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----K 290
Query: 412 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
G + A TEYD +EK +TPMGGFPHYG V +D++M +G G
Sbjct: 291 VG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F +
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388
Query: 114 K 112
K
Sbjct: 389 K 389
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 169 bits (411), Expect = 2e-42
Identities = 77/116 (66%), Positives = 92/116 (79%)
Frame = -2
Query: 625 KGKGYKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 446
KGKGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 445 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
+YR+G K G+ ++A TEYD +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = -3
Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 118
KGCC+GPKKR++TLR++L T R A+E+I LKFID +S GHGRFQT +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388
Query: 117 K 115
K
Sbjct: 389 K 389
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -1
Query: 749 IQLXGVPSRXK*NEPENILEKPIPVDSVFAQDEMIDCIGVXQGQ 618
IQ+ G K + ++ EK +PVD++F +DEMID IGV +G+
Sbjct: 184 IQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 475 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 323
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = -2
Query: 760 HIMESNLXGYHRGQSEMSQRTFWRNLSLSILCLPKMK*LTALVSXKGKGYKGVTSRWHTK 581
HI + L + G+SE++ RT ++ C+ + AL + +GK V R +
Sbjct: 592 HIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQ 651
Query: 580 KLPRKTHKGLRKVACIGAWH-PSRVSFTVARAGQKG 476
L R V IGA + P V R G+ G
Sbjct: 652 FLVELDGGERRNVYVIGATNRPDVVDPAFLRPGRFG 687
>At2g37720.1 68415.m04625 expressed protein
Length = 482
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 660 PR*ND*LHWCXPRAKDTKVSLLV 592
P ND LHWC P DT LL+
Sbjct: 457 PTFNDCLHWCLPGIPDTWNELLI 479
>At1g71400.1 68414.m08246 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 847
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 622 GKGYKGVTSRWHTKKLPRKTHKGLRKVAC 536
G Y W T+K RK HK L V C
Sbjct: 817 GHFYTSHNHEWFTEKFGRKQHKALTSVKC 845
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 206 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 111
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,441
Number of Sequences: 28952
Number of extensions: 365658
Number of successful extensions: 988
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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