Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A23
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0274 - 2901033-2901778,2902475-2902634                           31   0.92 
08_01_0059 - 394001-394708                                             29   3.7  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.7  
01_06_0581 - 30386018-30386440                                         28   8.5  

>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = +2

Query: 635 YQXSGTXCXPRXSPXPXXGPXXPLNPPXXRXSRXPSPXXPXXTPXXXLXXSRGPXP 802
           Y      C P  +P P  G   P  PP       P+P  P  TP      +  P P
Sbjct: 212 YGQPAPECPPPPTPAPECGQPAPEYPPSTPAYGTPAPECPPSTPEYGTPATACPPP 267


>08_01_0059 - 394001-394708
          Length = 235

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = +2

Query: 662 PRXSPXPXXGPXXPLNPPXXRXSRXPSPXXPXXTPXXXLXXSRGPXPXQXSXXSXXXVGV 841
           PR +P P   P  P  PP  R    P P  P   P   +     P P   S      + V
Sbjct: 21  PRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPP-APVPPPPSPPPHIVIIV 79

Query: 842 XF 847
            F
Sbjct: 80  VF 81


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 672 PPPXXXGPLXPLTPPXGXXRGXLLPP 749
           PPP   GP  P  PP G  +G   PP
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPP 380


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 271 SGVRSQVLXRLEMRLRSGGGGARRQ 345
           SG+  +V  R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,488
Number of Sequences: 37544
Number of extensions: 232535
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)