Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A23
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    32   0.44 
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   4.1  
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    29   5.4  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    28   7.1  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    28   7.1  

>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = +2

Query: 662 PRXSPXPXXGPXXPLNPPXXRXSRXPSPXXPXXTPXXXLXXSRGPXPXQ 808
           P  SP P   P  P +PP    S  P+P  P   P         P P Q
Sbjct: 109 PTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQ 157


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 657 AXPGXPPPXXXGPLXPLTPPXGXXRGXLLPP 749
           A P  PPP   GP  P  PP    +G   PP
Sbjct: 393 AAPPPPPPPKKGPAAPPPPPPPGKKGAGPPP 423


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 748 GGRRXPRXSPXGGVKGXXGPXXXGG 674
           GGR   R  P GG +G  GP   GG
Sbjct: 49  GGRGRGRGPPRGGARGGRGPAGRGG 73


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +2

Query: 671 SPXPXXGPXXPLNPPXXRXSRXPSPXXPXXTPXXXLXXSRGPXPXQXS 814
           SP P  GP  PL  P    S  P+P      P      S  P P   S
Sbjct: 216 SPLPSPGPDSPLPLPGPPPSSSPTPGPDSPLPSPGPPPSPSPTPGPDS 263


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 662 PRXSPXPXXGPXXPLNPPXXRXSRXPSPXXPXXTPXXXLXXSRGPXPXQXS 814
           P  SP P  GP  P +PP       P+   P  +P         P P Q S
Sbjct: 134 PPSSPSPNVGPTNPESPPLQSPPAPPA-SDPTNSPPASPLDPTNPPPIQPS 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,867
Number of Sequences: 28952
Number of extensions: 140634
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)