Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A21
         (783 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q69JN3 Cluster: Putative uncharacterized protein B1043F...    34   4.6  
UniRef50_Q2FRF6 Cluster: Molydopterin dinucleotide-binding regio...    34   4.6  

>UniRef50_Q69JN3 Cluster: Putative uncharacterized protein
           B1043F11.42; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           B1043F11.42 - Oryza sativa subsp. japonica (Rice)
          Length = 193

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 727 ESGGXGCDGSVPVRXQSPGPWRGGRLAGANVPRC 626
           ESGG G  GS P +  S G   GGR A A+  RC
Sbjct: 47  ESGGGGSGGSPPSQIWSEGEGGGGRTAAADGSRC 80


>UniRef50_Q2FRF6 Cluster: Molydopterin dinucleotide-binding region;
           n=4; Methanomicrobiales|Rep: Molydopterin
           dinucleotide-binding region - Methanospirillum hungatei
           (strain JF-1 / DSM 864)
          Length = 137

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +1

Query: 451 SRLDTDICHNIEMNAETAASGGLVAXGKXAXESRSRSTTANTAPGRQRXVPGXASSGKDI 630
           SR   D C  IEMN +     G++       +S S         GRQ   PG     + +
Sbjct: 27  SRQYFDACSIIEMNEQDMKELGIMKNTNVRVKSESGEVVVKAVVGRQTCYPGLCHIRQGV 86

Query: 631 WEH--LPPR 651
           W +  +PPR
Sbjct: 87  WANQVVPPR 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,526,024
Number of Sequences: 1657284
Number of extensions: 6650244
Number of successful extensions: 20427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20416
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)