Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A21
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0710 - 5355277-5355666 29 4.2
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 29 4.2
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 29 4.2
01_06_0581 - 30386018-30386440 29 4.2
01_06_1816 + 40086972-40087820,40088324-40088459,40088544-400886... 28 7.3
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 28 7.3
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 28 9.6
01_06_1220 + 35493575-35494765 28 9.6
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 9.6
>07_01_0710 - 5355277-5355666
Length = 129
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 GLVAXGKXAX--ESRSRSTTANTAPGRQRXVPGXASSGKDI 630
G VA G A ESR R++ AN+ GR+R V A G +
Sbjct: 84 GRVARGPLAPAGESRERTSAANSGEGRRRRVAEGARDGSGL 124
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +1
Query: 520 VAXGKXAXESRSRSTTANTAPGRQRXVPGXASSGKDIWEHLPPRAFXLATVLGSATALGQ 699
+A K A +RST AP RQR G I H+PP+A L L A +
Sbjct: 596 LANEKKAARDTARSTKPPLAPMRQRPPLGR------IGNHIPPKA-PLRLRLSKAPTIQN 648
Query: 700 SRHIPXLL 723
+IP +L
Sbjct: 649 KENIPVML 656
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 739 NXXFESGGXGCDGSVPVRXQSPGPWRGGRLAGANVPR 629
N + GG G G P + + P P+ GG + GA PR
Sbjct: 444 NRGGQGGGYG-SGPYPQQGRGPPPYPGGGMGGAGGPR 479
>01_06_0581 - 30386018-30386440
Length = 140
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 271 SGVRSQVLERLEMRLRSGGGGARRQ 345
SG+ +V +R+E R GGGG RR+
Sbjct: 31 SGIEVKVRKRVEKEARMGGGGRRRR 55
>01_06_1816 +
40086972-40087820,40088324-40088459,40088544-40088640,
40088742-40088842,40089149-40089312,40089407-40089595,
40089904-40090025,40090200-40090242
Length = 566
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = +1
Query: 442 ASPSRLDTDICHNIEMNAETAASGGLVAXGKXAXESRSRSTTANTAPGRQRXVPGXASSG 621
++P ++ D H + AASG + + + + A AP G
Sbjct: 6 SAPESMEAD--HQLTATVTAAASGDMPV----TEQQQQKQMVAVAAPPATENADAAGGGG 59
Query: 622 KDIWEHLPPRAFXLATVLGSATALG 696
D +HLPP A ++LG A G
Sbjct: 60 GDNGDHLPPTA---TSLLGGARRTG 81
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 568 ANTAPGRQRXVPGXASSGKDIWEHLPP 648
AN A G Q +P A++G +W +PP
Sbjct: 329 ANDADGLQLLLPDAAAAGDSVWVPVPP 355
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/92 (23%), Positives = 33/92 (35%)
Frame = +1
Query: 439 PASPSRLDTDICHNIEMNAETAASGGLVAXGKXAXESRSRSTTANTAPGRQRXVPGXASS 618
P + L HN +N T GG + A + A+ APG R V G ++
Sbjct: 77 PLRDAALSAFSWHNETLNVWTHL-GGFLLFLALALAGAAGDAAADVAPGIIRFVVGSTNA 135
Query: 619 GKDIWEHLPPRAFXLATVLGSATALGQSRHIP 714
+H + A +A LG +P
Sbjct: 136 SWQTNDHSGAASHDAAAAAAAAAVLGGGHGVP 167
>01_06_1220 + 35493575-35494765
Length = 396
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 490 NAETAASGGLVAXGKXAXESRSRSTTANTAPGRQ---RXVPGXASSGKDIWEHLPPRAFX 660
N + + GL A + ESRS N + R VP A+SG H+ P A
Sbjct: 22 NCDITSYSGLKARSSISFESRSSFLGQNASLRSSISPRIVP-KANSGS----HISPEASY 76
Query: 661 LATVLGSATALGQ 699
VLG+A +GQ
Sbjct: 77 KVAVLGAAGGIGQ 89
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 238 HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 339
H A C+ D G GVR + + RLR+G G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,075
Number of Sequences: 37544
Number of extensions: 236937
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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