Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A20
         (851 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M65158-1|AAA96439.1|  625|Homo sapiens type VII collagen protein.      33   1.7  
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.      33   1.7  
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen...    33   1.7  
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    31   4.0  
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    31   4.0  
X06700-1|CAA29886.1|  517|Homo sapiens alpha1 (III) collagen pro...    31   4.0  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    31   4.0  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              31   4.0  

>M65158-1|AAA96439.1|  625|Homo sapiens type VII collagen protein.
          Length = 625

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 551 RGXPGARAPRVTTG-PGXXXXCAGGAXPGXEFLEHLPPGTXPXXPRSLAXXPXLVQKPG 724
           RG PG R PR   G PG      GG  PG    +  P  + P  PR     P     PG
Sbjct: 520 RGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPG 578


>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
          Length = 2912

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 551  RGXPGARAPRVTTG-PGXXXXCAGGAXPGXEFLEHLPPGTXPXXPRSLAXXPXLVQKPG 724
            RG PG R PR   G PG      GG  PG    +  P  + P  PR     P     PG
Sbjct: 1334 RGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPG 1392


>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
            protein.
          Length = 2944

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 551  RGXPGARAPRVTTG-PGXXXXCAGGAXPGXEFLEHLPPGTXPXXPRSLAXXPXLVQKPG 724
            RG PG R PR   G PG      GG  PG    +  P  + P  PR     P     PG
Sbjct: 1334 RGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPG 1392


>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
            protein.
          Length = 1078

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 663  PGGKCSKNSXPGXAPPAQXXXXPGPVVTRGARAPGXPR 550
            P G   K+   G + PA     PGP  +RGA  P  PR
Sbjct: 907  PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 944


>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
            protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 663  PGGKCSKNSXPGXAPPAQXXXXPGPVVTRGARAPGXPR 550
            P G   K+   G + PA     PGP  +RGA  P  PR
Sbjct: 1054 PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091


>X06700-1|CAA29886.1|  517|Homo sapiens alpha1 (III) collagen
           protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 663 PGGKCSKNSXPGXAPPAQXXXXPGPVVTRGARAPGXPR 550
           P G   K+   G + PA     PGP  +RGA  P  PR
Sbjct: 105 PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 142


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
            alpha 1 chain protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 663  PGGKCSKNSXPGXAPPAQXXXXPGPVVTRGARAPGXPR 550
            P G   K+   G + PA     PGP  +RGA  P  PR
Sbjct: 1054 PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 663  PGGKCSKNSXPGXAPPAQXXXXPGPVVTRGARAPGXPR 550
            P G   K+   G + PA     PGP  +RGA  P  PR
Sbjct: 1054 PVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,574,603
Number of Sequences: 237096
Number of extensions: 1380057
Number of successful extensions: 3170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3166
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)