Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A19
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 142 7e-35
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 93 5e-20
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 31 0.19
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 31 0.25
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 29 0.57
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 29 0.57
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 29 1.00
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 28 1.3
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 28 1.3
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 1.3
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 3.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 3.0
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 26 5.3
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 7.0
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 7.0
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 7.0
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 9.3
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 9.3
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 142 bits (343), Expect = 7e-35
Identities = 66/136 (48%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLATV 411
G+A+GSVEGR AIQ ++ N NF+F+CHR G D+Y+VN IAFHP +GT +T
Sbjct: 215 GYAIGSVEGRCAIQNIDEKNASQNFSFRCHRNQA--GNSADVYSVNSIAFHPQYGTFSTA 272
Query: 410 GSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKGHEHYNPNKKT 231
GSDG+FSFWDKD+ +LKS + +++ FN +G IFAYA+ YDWSKG+ N
Sbjct: 273 GSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAISYDWSKGYTFNNAQLPN 332
Query: 230 FIYLR-ASYEELKARP 186
I L +E+K RP
Sbjct: 333 KIMLHPVPQDEIKPRP 348
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 92.7 bits (220), Expect = 5e-20
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPTNPKD--NFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLA 417
GF S+EGR +++Y+NP+ NFTFKCHR Y +Y VND+ FHP+H TLA
Sbjct: 192 GFVSSSIEGRTSVEYINPSQEAQSKNFTFKCHRQIQK--DYDIVYPVNDLKFHPIHQTLA 249
Query: 416 TVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYA 285
T G DG +FWD R +L+ +++ +FN G + A A
Sbjct: 250 TAGGDGVVAFWDIQVRKRLRVLNPSKINISSISFNVDGSMLAIA 293
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.19
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -1
Query: 458 VNDIAFHPVH-GTLATVGSDGSFSFWDKDART-----KLKSTELLDQSLTKCAFNHSG 303
V A++P AT DGS FW K +RT K+K L Q ++ +F+ G
Sbjct: 253 VTSCAWNPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDG 310
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTK---CAFNHSGQI 297
++ I HP +AT G DG+ W +A + E ++ L K C H+G +
Sbjct: 20 SIFSIHIHPDGSRIATGGLDGTIRIWSTEAINRENENENENEDLPKQLCCMSTHTGTV 77
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAF 315
V + FHP + +G W+ + +T ++S ++ D + CAF
Sbjct: 17 VKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAF 64
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 440 HPVHGTLATVGSDGSFSFWDKD 375
+PV L T SDGS WDKD
Sbjct: 246 YPVDDYLITASSDGSVCIWDKD 267
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWD 381
+ IA HP TVG DG WD
Sbjct: 123 ITGIAVHPSEKLALTVGGDGKLRLWD 148
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 28.7 bits (61), Expect = 1.00
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 684 KPAEFKRIESPXKHQHRCVSIFQGQEEQAADGLRAGQ-RGGPRGHPVREPDQPQGQLHVQ 508
KP ++ P H+ S F + +G ++ + RGG RG P+R + + H+
Sbjct: 1260 KPFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHIV 1319
Query: 507 VP 502
P
Sbjct: 1320 QP 1321
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTEL 345
VN I +P+H LA GS FWD R+++ E+
Sbjct: 187 VNVIDINPMHQLLAFGTDAGSVEFWDPRDRSRVGILEI 224
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 449 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYA 285
+AF+PV L + +G WD D + + D ++ A+ +G I A A
Sbjct: 235 VAFNPVGDLLLSADVEGKIKIWDIDTMECISTQSETDGAIWAVAWYKNGFIVAGA 289
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFW 384
AVN + F+P LAT G +G+ W
Sbjct: 69 AVNVVRFNPEGNILATAGDEGTIMLW 94
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 527 KDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLK 357
+DN K HR A G A+ +AF + +ATV D WD K++
Sbjct: 48 RDNINEK-HREAAAYGE-----AIRQVAFSKDYSRMATVSEDKCLRLWDSTQPDKIE 98
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -1
Query: 449 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDW 270
+AFHP + T +G WD T L + D + AF+ + +F + G D+
Sbjct: 17 VAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFV-SGGDDY 75
Query: 269 SKGHEHYNPNKKTF 228
+Y K F
Sbjct: 76 KVNVWNYKSRKLLF 89
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNH 309
V IAFHP + G D + W+ +R L S + C F+H
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHH 105
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDART-KLKST 351
V D+AF P T DGS W+ T +LK T
Sbjct: 167 VRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLT 203
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWD 381
V + +HP G LA+ D FWD
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVKFWD 234
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFW 384
+N +AFHP +A D S W
Sbjct: 341 INSLAFHPGSNVIALASKDTRISLW 365
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 458 VNDIAFHPVH-GTLATVGSDGSFSFWD 381
VND+ FHP H LA+V D + D
Sbjct: 238 VNDVQFHPQHEALLASVSDDCTLQIHD 264
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 524 DNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLATVGSDGSFSF 387
+NF+ T + D VND+ +HP H L +D +F
Sbjct: 213 NNFSRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNLYIAVNDNGIAF 258
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWD 381
VND+ HP G L + G WD
Sbjct: 127 VNDLLIHPNQGELLSCDQSGRVRAWD 152
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWD 381
V+ ++FHP LAT SD + WD
Sbjct: 490 VDCVSFHPNAAYLATGSSDHTTRMWD 515
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 449 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 291
I F P + LA G+D S WD +S +D + +F++ + A
Sbjct: 200 IEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLA 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,981
Number of Sequences: 5004
Number of extensions: 41473
Number of successful extensions: 181
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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