Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A19
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5833| Best HMM Match : WD40 (HMM E-Value=0.63) 208 4e-54
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 4e-17
SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 31 0.80
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 31 0.80
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 31 1.1
SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3) 30 1.8
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 29 3.2
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 29 5.6
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 29 5.6
SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 9.9
SB_25527| Best HMM Match : Fil_haemagg (HMM E-Value=9.6) 28 9.9
SB_55557| Best HMM Match : Tet_res_leader (HMM E-Value=1.9) 28 9.9
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_5833| Best HMM Match : WD40 (HMM E-Value=0.63)
Length = 152
Score = 208 bits (508), Expect = 4e-54
Identities = 99/146 (67%), Positives = 112/146 (76%), Gaps = 2/146 (1%)
Frame = -1
Query: 620 FKD-KKSKQPTGFALGSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIA 444
F+D KK+ QP GFALGSVEGRVAIQY+ P KDNFTFKCHR+ G QDIYAVNDIA
Sbjct: 7 FRDPKKNNQPVGFALGSVEGRVAIQYIQPETAKDNFTFKCHRSNGT--NVQDIYAVNDIA 64
Query: 443 FHPVHGTL-ATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWS 267
FHPVH L +TVGSDG FSFWDKDARTKLK++E L+ +T C FN G IFAYA GYDWS
Sbjct: 65 FHPVHHCLLSTVGSDGKFSFWDKDARTKLKTSEQLNLPITACCFNSQGTIFAYAAGYDWS 124
Query: 266 KGHEHYNPNKKTFIYLRASYEELKAR 189
KGHE++NP K I LR+ +ELK R
Sbjct: 125 KGHEYFNPQTKPKILLRSCTDELKPR 150
>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 85.8 bits (203), Expect = 4e-17
Identities = 45/107 (42%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPTNP--KDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLA 417
G+ L S+EGRVA++Y +P+ K F FKCHRT + IY VN IAFH +H T A
Sbjct: 145 GYVLSSIEGRVAVEYFDPSPEVQKKKFAFKCHRTKDKE--IEQIYPVNAIAFHNMHNTFA 202
Query: 416 TVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGY 276
T GSDG + WD + +L S+ AF+H G A A Y
Sbjct: 203 TGGSDGFVNIWDGFNKKRLCQFHRYPTSIASLAFSHDGSQLAIASSY 249
>SB_5194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 35.9 bits (79), Expect = 0.037
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 VNDIAFHPVHGT-LATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYA 285
V + F P L + SDG+ + WD D + +KS + ++ F+H G+IFA A
Sbjct: 93 VTTVKFFPFKDDRLMSTTSDGTITCWDLDNWSHMKSVDEPHNEISTLDFSHDGKIFATA 151
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = -3
Query: 636 RCVSIFQGQEEQAADGLRAGQRGGP-----RGHPVREPDQPQGQLHVQVPPDHG--SGGR 478
R ++I QE++++ R G GGP RGHP+R P G+ PP G G
Sbjct: 50 RALNIEYAQEKESSAPRRGGYGGGPPRGPPRGHPMRGRGAPYGR---GGPPSRGPPRGPP 106
Query: 477 LPGHLRR 457
LPG RR
Sbjct: 107 LPGPPRR 113
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSG 303
AV F P L + +D +F WD + ++ + L+ S+T CAF G
Sbjct: 100 AVRVCRFSPNSQFLISGSADETFIIWDVLLKKPVRCVDKLESSVTACAFTPDG 152
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSG 303
AV F P L + +D +F WD + ++ + L+ S+T CAF G
Sbjct: 100 AVRVCRFSPNSQFLISGSADETFIIWDVLLKKPVRCVDKLESSVTACAFTPDG 152
>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
Length = 458
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 440 HPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 291
H ++ AT +D S WD D +++ LD + +F+H G++ A
Sbjct: 242 HTLNQYFATGSADALVSLWDLDELVCVRTFSRLDWPVRTLSFSHDGRMLA 291
>SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)
Length = 567
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 183 CRTRFEFFVRCSQVNERLLIGVVVLVTLRPVIPDCIGKDLAAVVEGTLGEGLVQELGALE 362
C T+ + V CS V + +G + LV+ P+ C+ L AV G++ + +VQ +
Sbjct: 407 CVTQGRYLVTCSSVVQFWSLGTLDLVSATPLPKLCVNPRLVAV--GSVTQPVVQVVDVDG 464
Query: 363 LGSG 374
G G
Sbjct: 465 FGEG 468
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 485 VGGYQDIYAVNDIAFHPVHGTLATVGS-DGSFSFWDKDARTKLKSTELLDQSLTKCAFNH 309
+GG+ D V D+AF G L T GS D + WD A KLK + A++
Sbjct: 1454 LGGHSDW--VMDVAFSS-DGALLTSGSRDRTVRVWDCAAAEKLKKARFHSERCWSVAYSD 1510
Query: 308 SGQIFAYA 285
G A A
Sbjct: 1511 DGMWLASA 1518
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -3
Query: 648 KHQHRCVSIFQGQEEQAADGLRAGQRGGPRGHPVREPDQPQGQLHVQVPPDHGSGGRLP 472
KHQ + + Q Q++Q A G+ Q+GG +G + Q Q Q ++ +PP G LP
Sbjct: 1864 KHQQQLLQQQQQQQQQQA-GM---QQGGMQGMAPQAMQQQQMQHNMGMPPQGMQQGMLP 1918
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 464 YAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQI 297
Y +N +A+ P +AT G DG W+ + S+T F+ +GQ+
Sbjct: 1252 YDMNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTFHEHSASVTAVTFSPNGQV 1307
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTE 348
V IA P +A DG+ +FWD +A ++KS +
Sbjct: 1424 VVSIAVRPDGREVAISSLDGALTFWDLEAAVQVKSVD 1460
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWD 381
VN +AFHP +AT SD + WD
Sbjct: 170 VNKVAFHPNCNYIATGSSDRTVRLWD 195
>SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -1
Query: 461 AVNDIAF-HPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQS--LTKCAFNHSGQIFA 291
A+ + F H LA+V DG+ + WD ++R KL ++ + + T AF+ + ++
Sbjct: 127 AIRGLQFSHFKKALLASVSDDGASNLWDTNSR-KLVTSFVNEHKAPATALAFSPANEMLL 185
Query: 290 YAVGYD 273
+VG D
Sbjct: 186 TSVGLD 191
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 458 VNDIAFHPVHGTL-ATVGSDGSFSFWDKDARTKLKSTELLDQSLT 327
+ D+ + P+H L ATV G W+ ++ T++ +SLT
Sbjct: 469 IYDVKWSPIHPALFATVDGTGRLDLWNLNSDTEVPIASTATESLT 513
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 491 GAVGGYQDIYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKC 321
G V GY IY +D+ G L T+GS+ S F ++R +LD KC
Sbjct: 1058 GEVFGYLLIYP-SDLVAEIAGGDLRTIGSNKSLVFDGTNSRDPDFGKTILDDPSMKC 1113
>SB_25527| Best HMM Match : Fil_haemagg (HMM E-Value=9.6)
Length = 105
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 288 IGKDLAAVVEG-TLGEGLVQELGALELGSGV 377
+G+ L A G T+GEGLV E G ++G GV
Sbjct: 49 LGEGLVAKGGGFTVGEGLVAEGGGFKVGEGV 79
>SB_55557| Best HMM Match : Tet_res_leader (HMM E-Value=1.9)
Length = 90
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 511 NVKLSLGLVGFTYWMATRPSTLPSAKPVGCLLF 609
+V+L G + T W+ RP+ LP + V C+LF
Sbjct: 25 DVELGNGSIPETLWVIARPTRLP--RSVSCVLF 55
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 614 DKKSKQPTGFA-LGSVEGRVAIQYVNPTNPKDNFTFKCHR--TTGAVG 480
D+ +Q +G A LG + +Y+ PT P DN F H+ T G +G
Sbjct: 150 DRMERQTSGGAELGKFK-EYRTKYITPTIPHDNAQFLSHKGWTGGVIG 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,666,229
Number of Sequences: 59808
Number of extensions: 338163
Number of successful extensions: 1228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -