Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A19
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 146 1e-35
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 95 6e-20
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 87 2e-17
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 63 2e-10
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 38 0.008
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 32 0.38
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 32 0.50
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.66
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 1.5
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 30 1.5
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 30 1.5
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 30 1.5
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 30 2.0
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 30 2.0
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 29 2.6
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 29 2.6
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 29 2.6
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 3.5
At5g35960.1 68418.m04330 protein kinase, putative contains prote... 29 4.6
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 28 6.1
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 146 bits (355), Expect = 1e-35
Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPTNPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTLATV 411
GF +GS+EGRV + +++ + NFTFKCHR DIY+VN + FHPVHGT AT
Sbjct: 211 GFLVGSIEGRVGVHHLDDSQQSKNFTFKCHRDGN------DIYSVNSLNFHPVHGTFATA 264
Query: 410 GSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKGHEHYNP-NKK 234
GSDG+F+FWDKD++ +LK+ +Q + +FNH G I+AYA YDWSKG E++NP K
Sbjct: 265 GSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAK 324
Query: 233 TFIYLRASYE-ELKARP 186
+ I+L E E+KA+P
Sbjct: 325 SSIFLHLPQESEVKAKP 341
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -3
Query: 777 LTXRAYXAXVEYPMAVVGTAXXGIXMXTLEGKPAEFKRIESPXKHQHRCVSIFQGQE 607
L + Y V++P+ VVGTA + + L+ EFKRI+SP K+Q RCV+ F Q+
Sbjct: 154 LPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQ 210
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 94.7 bits (225), Expect = 6e-20
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Frame = -1
Query: 593 TGFALGSVEGRVAIQYVNPTNPKD--NFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTL 420
TG+AL SVEGRVA+++ + + + FKCHR + A G +Y VN IAFHP++GT
Sbjct: 199 TGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEA--GRDIVYPVNSIAFHPIYGTF 256
Query: 419 ATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKGHEHYNPN 240
AT G DG + WD + + +L S++ +F+ GQ+ A A Y + +G + P
Sbjct: 257 ATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQEPE 316
Query: 239 KKTFIYLRASYE-ELKARPTQ*PH 171
I++R+ E E+K +P P+
Sbjct: 317 A---IFVRSVNEIEVKPKPKVYPN 337
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 86.6 bits (205), Expect = 2e-17
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Frame = -1
Query: 593 TGFALGSVEGRVAIQYVNPTNPKD--NFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTL 420
TG+AL SVEGRV++++ + + + FKCHR + G +Y VN IAFHP++GT
Sbjct: 198 TGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCHRKSE--DGRDIVYPVNAIAFHPIYGTF 255
Query: 419 ATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKGHEHYNPN 240
A+ G DG + WD + + +L S+ +F+ G + A A Y + +G + + P+
Sbjct: 256 ASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPD 315
Query: 239 KKTFIYLRASYE-ELKARPTQ*PH 171
I++R+ E E+K +P P+
Sbjct: 316 A---IFVRSVNEIEVKPKPKVYPN 336
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPT-NPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPV-HGTLA 417
G+A+GSV+GRVA+ + N + + + ++F+CH + G D +N I F P GT
Sbjct: 191 GYAVGSVDGRVAVDFPNTSCSSEIKYSFRCHPKSR--NGRLDGVCINAIEFSPCGSGTFV 248
Query: 416 TVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDWSKGHE 255
T ++G W+ +R +L S+ AF+H+G++ A A + + E
Sbjct: 249 TGDNEGYVISWNAKSRRRLNELPRYSNSIASLAFDHTGELLAIASSHTYQDAKE 302
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = -1
Query: 590 GFALGSVEGRVAIQYVNPT-NPKDNFTFKCHRTTGAVGGYQDIYAVNDIAFHPVHGTL 420
G+A+GSV+GRVA+ + N + + + ++F+CH + G D +N I F P + +L
Sbjct: 191 GYAVGSVDGRVAVDFPNTSCSSEIKYSFRCHPKSR--NGRLDGVCINAIEFSPWYMSL 246
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 443 FHPVHGTLATVG-SDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQI 297
FHP H TL VG S G + W+ +R K+ + ++ C+ G I
Sbjct: 355 FHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSI 404
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 452 DIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYD 273
D+ F PV LAT +D + W D T L++ E L + AF+ SG+ + YD
Sbjct: 303 DVVFSPVDDCLATASADRTAKLWKTDG-TLLQTFEGHLDRLARVAFHPSGK-YLGTTSYD 360
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 449 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 291
+AFHP L T D ++ WD + +L E +S+ AF G + A
Sbjct: 345 VAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQ 300
+ + FHP+ LAT +D + FWD + + +T + AF+ GQ
Sbjct: 136 IRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDGQ 188
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGS-DGSFSFWDKDARTKLKSTELLDQSLTKCA 318
V + F+P+ TL VGS G + W+ AR +L S ++ C+
Sbjct: 348 VTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCS 395
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 464 YAVNDIAFHPVHGTLATVGSDGSFSFWD 381
++V D++FHP L T +DG WD
Sbjct: 18 HSVMDVSFHPSKSLLFTGSADGELRIWD 45
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSG-QIFAYA 285
+V +A+HP + LAT +DG + T +K + D A G QI
Sbjct: 147 SVTSVAWHPNNVLLATTSTDGKCRVFS----TFIKGVDTKDSKAGSPAETKFGEQILQLD 202
Query: 284 VGYDWSKGHEHYNPNKKTFIYL 219
+ Y W+ G + ++P+ T Y+
Sbjct: 203 LSYSWAFGVK-WSPSGNTLAYV 223
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSG-QIFAYA 285
+V +A+HP + LAT +DG + T +K + D A G QI
Sbjct: 147 SVTSVAWHPNNVLLATTSTDGKCRVFS----TFIKGVDTKDSKAGSPAETKFGEQILQLD 202
Query: 284 VGYDWSKGHEHYNPNKKTFIYL 219
+ Y W+ G + ++P+ T Y+
Sbjct: 203 LSYSWAFGVK-WSPSGNTLAYV 223
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 476 YQDIYAVNDIAFHPVHGTLATVGSDGSFSFW 384
+ D V + FHP+ G LAT G+D W
Sbjct: 10 WHDGKPVLTVDFHPISGLLATAGADYDIKLW 40
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 476 YQDIYAVNDIAFHPVHGTLATVGSDGSFSFW 384
+ D V + FHP+ G LAT G+D W
Sbjct: 10 WHDGKPVLTVDFHPISGLLATAGADYDIKLW 40
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKD 375
A+ D+A+HPVH + +V G W KD
Sbjct: 338 ALIDLAWHPVHPIIVSVSLAGLVYIWAKD 366
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 500 RTTGAVGGYQDIYAVNDIAFHPVHGTLATVGSDGSFSFWDKDART 366
R G Y+ + AVN + HP L + +G+ WD A +
Sbjct: 108 RAPGCQKEYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRANS 152
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 458 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQ 300
+ + FHP+ LAT +D + FWD + + ST + F+ G+
Sbjct: 187 IRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGR 239
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQ 300
A+N IAF LATVG DG +D + + + +L CA++ G+
Sbjct: 305 AINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGK 358
>At5g35960.1 68418.m04330 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 429
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 497 TTGAVGGYQDIYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSL 330
T G V D++A+ + V G A S S W K K K EL+D SL
Sbjct: 307 THGIVDEKTDVFALGVLLLELVTGRRALDYSKQSLVLWAKPLMKKNKIRELIDPSL 362
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -1
Query: 461 AVNDIAFHPVHGTLATVGSDGS---FSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 291
+V +A+HP + LAT +DG FS + K TK L F QI
Sbjct: 147 SVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYA------HYLNGAFFLLKQQILQ 200
Query: 290 YAVGYDWSKGHEHYNPNKKTFIYL 219
+ Y W+ G + ++P+ T Y+
Sbjct: 201 LDLSYSWAFGVK-WSPSGNTLAYV 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,638
Number of Sequences: 28952
Number of extensions: 235607
Number of successful extensions: 821
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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