Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A17
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.1  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   9.4  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   9.4  

>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 451 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = -2

Query: 497 DLHDDLDLESISKYLQSASMRHFD-------KAARHEDPLIVAAGNYIPDPADRMESSRR 339
           ++HDD+D E           R F+       +  R ED + +     IP+P  + +   R
Sbjct: 734 EMHDDVDKEQFGYSSMYVFFRLFNLLYERLYELQRLEDQVSIIQQRIIPNPVSQKQKIWR 793

Query: 338 RPKHVISDPPDPLT 297
              + +SD PD  T
Sbjct: 794 DRWNDLSDVPDEKT 807


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 149 GRFCEARLLLGFVLATSSGLSPVSSPTKVKA 57
           G F +A   +   LA +SGLS + + T VKA
Sbjct: 451 GAFADALDTIPLALAENSGLSSIEALTAVKA 481


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 VANTNPSKSRASQNLPPXSETRPTEKIRRETQWA 204
           +   +P   R + N+P        E+IR+E +WA
Sbjct: 125 IRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,164
Number of Sequences: 5004
Number of extensions: 52485
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)