Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A17
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   1.8  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    29   5.6  
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    29   5.6  
01_06_0475 + 29610268-29610711                                         28   7.4  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   9.8  
03_05_0060 + 20363857-20365359                                         28   9.8  

>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 467 ISKYLQSASMRHFDKAARHEDPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 312
           +S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +1

Query: 118 PSKSRASQNLPPXSETRPTEKIR 186
           PSKSRASQ  PP + TR T+K +
Sbjct: 207 PSKSRASQ-APPPAHTRATKKAK 228


>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 94  PDDVANTNPSKSRASQNLPPXSETRPTEKIRRET 195
           P       PSKSRA Q  PP + TR T+K + +T
Sbjct: 115 PPQAPRPAPSKSRAPQ-APPPAPTRATKKAKVDT 147


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -2

Query: 551 QSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAARHEDPLI--VAA 387
           +++F ++AV GAP ++R VDL      + +   LQ     HF   K    E  L+  V+ 
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 386 GNYIPDPADR 357
             Y+P   D+
Sbjct: 177 NEYVPTYEDK 186


>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 298 VSGSGGSEMTCLGRRRLLSILSAGSGM*LPAATMRGSS 411
           +SG  G  ++C  R  +   ++A S + + AA +RGSS
Sbjct: 146 ISGESGGAVSCARRDYVTKGINASSDLGVKAANIRGSS 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,672,025
Number of Sequences: 37544
Number of extensions: 411858
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)