Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A17
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25605.1 68415.m03067 expressed protein 31 1.2
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 30 2.0
At5g14600.1 68418.m01712 expressed protein 29 3.6
At4g17500.1 68417.m02618 ethylene-responsive element-binding pro... 29 4.7
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 28 8.2
At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 28 8.2
At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 28 8.2
At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 28 8.2
At2g45160.1 68415.m05622 scarecrow transcription factor family p... 28 8.2
At1g11760.1 68414.m01349 expressed protein weak similarity to Pf... 28 8.2
>At2g25605.1 68415.m03067 expressed protein
Length = 200
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -2
Query: 449 SASMRHFDKAARHEDPLIVAAGNYIPD--PADRMESSRRRP 333
SA+++HF+ R L+ A+ + +PD AD +ES R+RP
Sbjct: 16 SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56
>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +2
Query: 173 LRRSGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 271
L SG+++ G CLR NL+ + +VA+ D + ++GD
Sbjct: 143 LLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178
>At5g14600.1 68418.m01712 expressed protein
Length = 318
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 457 ICSRRPCATSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVALNTSSRI 314
+CS PC ++R S + + TF +L ++ +V ++TSS +
Sbjct: 209 LCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLLRTYEVKEVKMDTSSMV 256
>At4g17500.1 68417.m02618 ethylene-responsive element-binding
protein 1 (ERF1) / EREBP-2 protein identical to
SP|O80337 Ethylene responsive element binding factor 1
(EREBP-2 protein) [Arabidopsis thaliana]; a false single
bp exon was added to circumvent a single basepair
insertion in the genomic sequence, supported by
cDNA/genome alignment.
Length = 188
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 387 GGHDERVLVSCRFIEVAHGRRLQIL 461
GG D+ + V C +EVA G RL +L
Sbjct: 164 GGMDKGLTVKCEVVEVARGDRLLVL 188
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 211 QTQPTEFLAGSSQWVAFPXPVVDSAKH 131
+T+P +AGS +W+ P P S +H
Sbjct: 396 RTEPYIMIAGSGRWIPPPLPATRSPEH 422
>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At2g45160.1 68415.m05622 scarecrow transcription factor family
protein
Length = 640
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 748 PHIKTVRDPCRLHFRTSXPR*YVGEVKCPLEIR*HSTKLAYAPS 617
P TV D L F + + GEVK P EI S +L P+
Sbjct: 425 PPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPA 468
>At1g11760.1 68414.m01349 expressed protein weak similarity to Pfam
PF01648: 4'-phosphopantetheinyl transferase superfamily
Length = 393
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 67 LVGELTGLKPDDVANTNPSK-SRASQNLPPXSETRPTEKIRRETQWAVSE 213
LV E TGL P+ + A+ +LPP S R E++ R +W V E
Sbjct: 96 LVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVR-LEQMSRAVRWLVLE 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,624
Number of Sequences: 28952
Number of extensions: 305148
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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