Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A16
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   7.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.8  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 471  SFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRR 337
            SF  +L  A + ++  AA  +N + ++  N+I    +R++NRR +
Sbjct: 1253 SFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 301 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 176
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -2

Query: 397 RSRW*LHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 218
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 217 THRHS 203
             + +
Sbjct: 81  VRKEA 85


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 352 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 194
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 213 WVSSLVEPFVASDGFDEDGDRCLWCLK 293
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 333 KHVITDPPDPLTVLLGTTSTGH 268
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -2

Query: 349 PSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSG 170
           PS S    +YG+  ++  +       S SSS+ S++T   +   T   SP S S    SG
Sbjct: 30  PSASVSI-NYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG 88

Query: 169 SRFRXRW*ILRSTALARVSVSNS 101
           +       +  S  +   S +NS
Sbjct: 89  TSVITASDVSASNEIISSSTNNS 111


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 304 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 185
           +NG  +HH +R  +SS   L++ GS +E +  H P +  P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,282
Number of Sequences: 5004
Number of extensions: 62484
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)