Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A16
         (818 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    35   0.31 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                35   0.31 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    35   0.31 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    35   0.31 
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          31   5.0  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    31   5.0  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    31   5.0  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   5.0  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 652 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 551
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 652 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 551
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 652 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 551
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 652 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 551
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 355  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 221
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 355  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 221
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP205
            protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 355  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 221
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP220
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 355  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 221
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,851,172
Number of Sequences: 237096
Number of extensions: 2452490
Number of successful extensions: 9474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9462
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)