Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A16
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 35 0.061
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 34 0.14
Z83221-1|CAB05709.1| 246|Caenorhabditis elegans Hypothetical pr... 30 2.3
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 4.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 4.0
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 29 4.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 5.3
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = -3
Query: 675 SKLSLRNK---VTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 535
+K S NK + LYKT IRP + Y +VV + +++ K+++ +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -3
Query: 651 VTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 535
+ LYKT IRP + Y +VV + +++ K+++ +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>Z83221-1|CAB05709.1| 246|Caenorhabditis elegans Hypothetical
protein C49A1.1 protein.
Length = 246
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 579 TNLKSLQVIQSRFCRIAVGAPWFLRNVDL---HDDLELDSFSKYLQSASLRHFEKAARHE 409
TN++ + ++ R G W+LRN + H+D + + + ++ +K + E
Sbjct: 107 TNVQCIYFVEDGKKRRMAGVTWYLRNDEKSKNHEDYNMIAIYETIREKRFEEVQKIRKLE 166
Query: 408 NPLIVAAGNYIPDPVD 361
+ G ++ +P D
Sbjct: 167 KEEALRRGGWLGEPTD 182
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 492 HDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYI 376
H D E ++ ++ + S RH ++ E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 492 HDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYI 376
H D E ++ ++ + S RH ++ E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 355 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 176
G+ S+ K RH G S S + HH H+ + LAT + + +P + +P L
Sbjct: 944 GRASSEKKKRHVGGSSS--SSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPL 1001
Query: 175 SGS 167
S S
Sbjct: 1002 SSS 1004
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 480 ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 313
E+D SK + S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 3753 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 3807
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 480 ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 313
E+D SK + S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 4707 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 4761
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 480 ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 313
E+D SK + S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 5610 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 5664
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 480 ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 313
E+D SK + S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 6513 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 6567
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 480 ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 313
E+D SK + S + A+ + P + A N I D R+VN KHV TDP
Sbjct: 7416 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 7470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,276
Number of Sequences: 27780
Number of extensions: 375159
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -