Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A16
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38570.1 68415.m04738 expressed protein ; expression supporte...    29   3.7  
At4g38400.1 68417.m05428 expansin family protein (EXPL2) contain...    28   8.6  
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai...    28   8.6  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   8.6  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   8.6  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   8.6  
At2g25605.1 68415.m03067 expressed protein                             28   8.6  
At1g12330.1 68414.m01425 expressed protein                             28   8.6  

>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 207 CLWVSSLVEPFVASDGF-DEDGDRCLWCLKAPLMDQED 317
           C W+ S   PF+    F ++  D  + CL + L ++ED
Sbjct: 41  CFWIDSKNSPFLGQFSFIEKPRDNFICCLSSSLSNEED 78


>At4g38400.1 68417.m05428 expansin family protein (EXPL2) contains
           Pfam profile: PF01357 pollen allergen; expansin-like
           gene, PMID:11641069, www.bio.psu.edu/expansins
          Length = 265

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 331 LWATSTVYHSVYWVGYVITSGYDERVLMSCRLL 429
           +W T  V +      +V+T+GYD +++ S R+L
Sbjct: 200 VWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVL 232


>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 623

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 77  GELAGLNRRVANTDPSKSSASQNLPPXSETRPTEKIRRETQWAVSMG*F 223
           GE+ G+    + T    SS S+ +PP    RP E+    T  A + G F
Sbjct: 136 GEIIGVRAVESGTVTEASSPSEVVPPVKRRRPRERKVPSTPMARAYGFF 184


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 280 KHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 280 KHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 280 KHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLS 173
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 450 SASLRHFEKAARHENPLIVAAGNYIPD--PVDRMVNRRRRP 334
           SA+++HF    R    L+ A+ + +PD    D + +RR+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 119 PSKSSASQNLPPXSETRPTEKIRRETQWAVSM 214
           P  SSA+  LPP S +       RE QW +++
Sbjct: 147 PKPSSATAALPPRSSSSSAADASREEQWRLAV 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,674
Number of Sequences: 28952
Number of extensions: 354452
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)