Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A15
(758 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 268 1e-70
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 254 2e-66
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 230 2e-59
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 205 8e-52
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 181 1e-44
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 163 6e-39
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 142 6e-33
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 3e-24
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 110 3e-23
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 85 2e-15
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 84 4e-15
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 80 7e-14
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 77 4e-13
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 75 1e-12
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 75 3e-12
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 71 2e-11
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 68 3e-10
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 65 2e-09
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 65 2e-09
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 62 2e-08
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 55 2e-06
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 52 1e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 52 2e-05
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 48 3e-04
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.4
UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081... 35 1.9
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:... 34 3.3
UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 7.7
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 268 bits (657), Expect = 1e-70
Identities = 130/209 (62%), Positives = 157/209 (75%)
Frame = -1
Query: 725 DKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPVRHTKXLRKV 546
+K+ WARE LE + + + + + K K + P + + LRKV
Sbjct: 192 EKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKV 251
Query: 545 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 366
ACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS+
Sbjct: 252 ACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSD 311
Query: 365 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 186
KSI P+GGF HYGEV NDFVM+KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+
Sbjct: 312 KSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTT 371
Query: 185 SKFGHGRFQTPADKAAFMGTLKKDRIREE 99
SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 372 SKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 254 bits (622), Expect = 2e-66
Identities = 120/208 (57%), Positives = 148/208 (71%)
Frame = -1
Query: 725 DKVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPVRHTKXLRKV 546
+KV WA+ LE + + + + + + K + P + K LRKV
Sbjct: 192 EKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKV 251
Query: 545 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 366
ACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNNAST YD++
Sbjct: 252 ACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTA 311
Query: 365 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 186
KSITP+GGFPHYGEVNNDFVM+KGC G KKR+ITLRKSL VH R A+E I LKFIDT+
Sbjct: 312 KSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTT 371
Query: 185 SKFGHGRFQTPADKAAFMGTLKKDRIRE 102
SKFGHGRFQT +K AFMG KK +E
Sbjct: 372 SKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 230 bits (563), Expect = 2e-59
Identities = 108/162 (66%), Positives = 130/162 (80%)
Frame = -1
Query: 587 RSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 408
+ P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK 249
Query: 407 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 228
NN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 250 ---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKR 306
Query: 227 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 102
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 307 VAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = -3
Query: 672 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
V A +MID I TSRWHTKKLPRKTH+G
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 205 bits (501), Expect = 8e-52
Identities = 96/160 (60%), Positives = 118/160 (73%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + + LRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP----- 349
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 99
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 717 EMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
E+ + + + +DSVF Q E D RW LPRKTH+G
Sbjct: 249 ELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRG 301
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 181 bits (441), Expect = 1e-44
Identities = 93/167 (55%), Positives = 117/167 (70%)
Frame = -1
Query: 599 VGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 420
V QR+ P R + K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLI 271
Query: 419 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 240
KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + KK +T+ K L V
Sbjct: 272 KDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTKKH-LTICKYLLV 330
Query: 239 HTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 99
T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 331 QTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 163 bits (395), Expect = 6e-39
Identities = 92/203 (45%), Positives = 127/203 (62%)
Frame = -1
Query: 722 KVKWAREHLENLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYPVRHTKXLRKVA 543
K+ WA + LE + + + +++ L + + + K K + P + + + A
Sbjct: 149 KLDWAHKKLEQ-QVPVNHIFRVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAA 207
Query: 542 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 363
CI W +VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAST+Y K
Sbjct: 208 CI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---K 257
Query: 362 SITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 183
SI+P+GG H G+V NDFVM+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+S
Sbjct: 258 SISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTS 317
Query: 182 KFGHGRFQTPADKAAFMGTLKKD 114
KFGHG FQ +K FMG LKKD
Sbjct: 318 KFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 142 bits (345), Expect = 6e-33
Identities = 73/149 (48%), Positives = 99/149 (66%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + + LRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYS 279
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
N+ S D KS+ MGGF +G +NND+++IKG G KR I LRK+++
Sbjct: 280 NSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVIT 336
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFM 132
EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 337 EKIILKYVDTSSKRGHGRYESSADKFSKM 365
Score = 39.9 bits (89), Expect = 0.067
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -3
Query: 732 PSGQSEMGQRTSGEPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
P + E + + + I ++S+F ++++ID I SRW +LPRKTH+G
Sbjct: 172 PKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 3e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -1
Query: 413 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 234
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 233 KRAALEK 213
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 110 bits (265), Expect = 3e-23
Identities = 57/131 (43%), Positives = 83/131 (63%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+ +K RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K +
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLD 298
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 213
+TE + ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++
Sbjct: 299 ENTEIE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 353
Query: 212 INLKFIDTSSK 180
+ ++ SK
Sbjct: 354 PQITYVSVESK 364
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -1
Query: 287 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 108
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 107 REE 99
+E
Sbjct: 148 AKE 150
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 84.6 bits (200), Expect = 2e-15
Identities = 49/127 (38%), Positives = 68/127 (53%)
Frame = -1
Query: 554 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 375
R V IG W P V ++V GQ GYH RTE NK+I +IG NN
Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD---- 273
Query: 374 LSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFI 195
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I
Sbjct: 274 ----EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYI 327
Query: 194 DTSSKFG 174
T+SK G
Sbjct: 328 STTSKQG 334
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 83.8 bits (198), Expect = 4e-15
Identities = 50/142 (35%), Positives = 75/142 (52%)
Frame = -1
Query: 599 VGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 420
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 419 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 240
D +E+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR- 316
Query: 239 HTKRAALEKINLKFIDTSSKFG 174
K + + ++ T SK G
Sbjct: 317 -PKNMPKQAPEITYLSTQSKMG 337
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 79.8 bits (188), Expect = 7e-14
Identities = 46/133 (34%), Positives = 71/133 (53%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRISNP------------ 294
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 213
E +TP GGF HYGEV N +++++G GP KR++ R +R HT +
Sbjct: 295 -------GESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFD 344
Query: 212 INLKFIDTSSKFG 174
++L ++ TSSK G
Sbjct: 345 VDLTYVSTSSKQG 357
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 77.4 bits (182), Expect = 4e-13
Identities = 45/104 (43%), Positives = 59/104 (56%)
Frame = -1
Query: 554 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 375
R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 236 RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------------ 278
Query: 374 LSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
+ +TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 279 ---EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 75.4 bits (177), Expect = 1e-12
Identities = 48/133 (36%), Positives = 70/133 (52%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI--------------- 271
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 213
A E E ITP GGF HYGEV N +++I+G GP KR+I R + R R
Sbjct: 272 AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPP 324
Query: 212 INLKFIDTSSKFG 174
+++ ++ T+SK G
Sbjct: 325 VDITYVSTASKQG 337
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 74.5 bits (175), Expect = 3e-12
Identities = 42/127 (33%), Positives = 69/127 (54%)
Frame = -1
Query: 554 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 375
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP--------------- 276
Query: 374 LSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFI 195
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++
Sbjct: 277 ------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYV 328
Query: 194 DTSSKFG 174
T+S G
Sbjct: 329 STASNQG 335
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 71.3 bits (167), Expect = 2e-11
Identities = 46/135 (34%), Positives = 65/135 (48%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P ++ K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+A T I GGF HYG V ND+V++ G GP KR+I +R R K +
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR--QKVPDI 315
Query: 218 EKINLKFIDTSSKFG 174
+ + L +I SK G
Sbjct: 316 DNVKLDYISLESKQG 330
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 67.7 bits (158), Expect = 3e-10
Identities = 38/118 (32%), Positives = 60/118 (50%)
Frame = -1
Query: 563 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
K +R++ +G P V +TV RAGQ G+H R E NK+I +G G+
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------- 270
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 210
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 -----DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 65.3 bits (152), Expect = 2e-09
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = -1
Query: 563 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
K +R+V +G P V +TV RAGQ G+H R E +K+I +G +T
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NT 270
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
+ D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 64.9 bits (151), Expect = 2e-09
Identities = 43/128 (33%), Positives = 66/128 (51%)
Frame = -1
Query: 563 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
K +RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ +
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVE----------- 266
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 204
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +
Sbjct: 267 ------------GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GI 312
Query: 203 KFIDTSSK 180
++I S K
Sbjct: 313 EYISLSPK 320
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 61.7 bits (143), Expect = 2e-08
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H K ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 55.2 bits (127), Expect = 2e-06
Identities = 39/110 (35%), Positives = 53/110 (48%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H K RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 288 -------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 52.4 bits (120), Expect = 1e-05
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 396
+H K RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
++ +TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 52.0 bits (119), Expect = 2e-05
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 396
+H K R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAA 222
+TP GGF YG V + FVM+ G G KR I +R ++R +
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLG 327
Query: 221 LEKINLKFIDTSSKFG 174
+ K + +I +SK G
Sbjct: 328 VRKPEITYISLASKQG 343
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 47.6 bits (108), Expect = 3e-04
Identities = 35/110 (31%), Positives = 50/110 (45%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H K R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------- 296
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 243
I GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 297 -----------INVEGGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 595 PTRSDTFVSFALGDTNAVNHFILGKHRIDRDRF 693
P+ DT + GD+N +NHFIL ++R++R+ F
Sbjct: 42 PSVGDTLETVTFGDSNDINHFILFENRVNRNFF 74
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 247 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 125
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081 -
Homo sapiens (Human)
Length = 92
Score = 35.1 bits (77), Expect = 1.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 659 SWANTESTGIGSPDVLWPISLCP 727
SW N+ S G+G+P +LWP LCP
Sbjct: 26 SWPNSPSLGVGAPIILWP-GLCP 47
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 34.7 bits (76), Expect = 2.5
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +3
Query: 258 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHWCNGFLRQVILSRCIVFNNFAILFVDSLS 437
+ N+ + TL H ++ YF + +SH ++I + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 438 NTIDFLVHFSTVMITFLTST 497
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 2.5
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -1
Query: 446 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 267
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 266 ITLRKSLR 243
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:
ENSANGP00000012392 - Anopheles gambiae str. PEST
Length = 250
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = -1
Query: 572 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
RHT+ V + P S T +R + RT + +Y G N
Sbjct: 27 RHTQNSLNVPIVVQPAPVSASSTASRYASTAHEQRTGASGPVYYAPAAGASTYGSQYSNT 86
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDF 309
A++ S GGF HY N+DF
Sbjct: 87 AASSSHNSRYKAGSAGGFVHYPIANDDF 114
>UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Dorea longicatena DSM 13814
Length = 152
Score = 33.5 bits (73), Expect = 5.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 315 VVYFTIMGETSHWCNGFLRQVILSRCIVF 401
+++FT GE HW + FLRQV+ RC +F
Sbjct: 41 MMFFTYQGELVHWQDDFLRQVL--RCSIF 67
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 5.8
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -1
Query: 488 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 309
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 308 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 7.7
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -1
Query: 326 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 201
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,243,391
Number of Sequences: 1657284
Number of extensions: 15368563
Number of successful extensions: 36999
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36987
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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