Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A15
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   5.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 RMAKLLKTMHLLSMTCLRNPLHQWE 344
           R+AKLL  + LL ++ L   + QWE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 RMAKLLKTMHLLSMTCLRNPLHQWE 344
           R+AKLL  + LL ++ L   + QWE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 RMAKLLKTMHLLSMTCLRNPLHQWE 344
           R+AKLL  + LL ++ L   + QWE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 745 LXGGTIGTK*NGPENIWRTYPCR 677
           L  G +  +  GPE+ ++TY CR
Sbjct: 160 LPSGELHIRDVGPEDGYKTYQCR 182


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 737 WYHRDKVKWAREH 699
           W+   ++KW +EH
Sbjct: 55  WFQNRRMKWKKEH 67


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 229 LFVCTRRDFLRVMIRFL 279
           ++ C  RDF R  +R L
Sbjct: 389 IYACWSRDFRRAFVRIL 405


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 758 LXNPTXRWYHRDKVKW 711
           L +PT  W+ + ++KW
Sbjct: 257 LSHPTYDWFEKLELKW 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,694
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)