Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A15
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 209 2e-54
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 209 2e-54
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 207 5e-54
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 3.4
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 3.4
At5g11390.1 68418.m01329 expressed protein 29 3.4
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.4
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR... 28 5.9
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 28 5.9
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 7.7
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 209 bits (510), Expect = 2e-54
Identities = 98/154 (63%), Positives = 118/154 (76%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K G
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA- 295
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+ A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 117
E+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -3
Query: 687 IPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
IP+++VF +DEMID I +RW +LPRKTH+G
Sbjct: 206 IPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 209 bits (510), Expect = 2e-54
Identities = 98/154 (63%), Positives = 118/154 (76%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K G
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA- 295
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+ A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLAL 355
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 117
E+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 356 EEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -3
Query: 687 IPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
IP+++VF +DEMID I +RW +LPRKTH+G
Sbjct: 206 IPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 207 bits (506), Expect = 5e-54
Identities = 98/154 (63%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Frame = -1
Query: 578 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQET- 295
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
++A TEYD +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR++L T R A+
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAM 355
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 120
E+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 356 EEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -3
Query: 687 IPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 559
+PVD++F +DEMID I +RW +LPRKTH+G
Sbjct: 206 VPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 656 SSWANTESTGIGSPDVLWPISLCPD 730
SS A +S G+ PDV WP S C +
Sbjct: 508 SSKACNDSVGVSIPDVKWPDSCCQE 532
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -1
Query: 359 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 189
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340
Query: 188 SSKFGHGRFQTPADKAAFMGTLKKD 114
+ +G DK++ G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 637 CHQGQRIQRCHFSLAHKEATP*DTPRXLGKLPALELGIL 521
CHQG R+Q SL + E + +G + L++G L
Sbjct: 639 CHQGSRLQATFISLTNPEEEETGSKSDIGSVRRLDVGAL 677
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 479 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 327
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1179
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -2
Query: 565 PRXLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKESTKRMAKLLK 398
P LGKL AL+ +L GC L V I +K + ++LD + K M KLL+
Sbjct: 782 PEFLGKLKALQELVLSGCSKL---KTFSVPIETMK-CLQILLLDGTALKEMPKLLR 833
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 378 ILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPK 557
++ CI + +LF+DS+ + + F T T Y + H MP + K
Sbjct: 151 VVPNCISLPSLKVLFLDSIWFEVPQFLIFLTACPALEDLTIYQKPHSVGMPYHISSKTIK 210
Query: 558 XLGVSY 575
L V+Y
Sbjct: 211 RLSVTY 216
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 211 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 116
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,627
Number of Sequences: 28952
Number of extensions: 350625
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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