Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A13
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +1

Query: 565 EHHGEHGAGRQRVCRGXSPERNLEHCHASXHLXXGPXFXPHWKDPLXP 708
           E +G H A R R  R  SP+     C           F  H  DPL P
Sbjct: 354 EMNGRHAAPRHRKIRCQSPQEPSIRCEPIKRTLLNEAFVQHKPDPLDP 401


>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 574 GEHGAGRQRVCRGXSPERNLEHCHASXH 657
           G+   GR RVC   +P R  EHC    H
Sbjct: 49  GQGVRGRTRVCNNPAPGRLGEHCAGKDH 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,431
Number of Sequences: 59808
Number of extensions: 168005
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)