Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A12
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = -2

Query: 794 PSLRSVTNCWRTKSQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALSIP 642
           P +  V   W T S  P  PGA   +P    +P   + L  +   F     IP
Sbjct: 179 PEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIP 231


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = -2

Query: 794 PSLRSVTNCWRTKSQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALSIP 642
           P +  V   W T S  P  PGA   +P    +P   + L  +   F     IP
Sbjct: 71  PEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIP 123


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 413 SNSSLELGTEIFWFDVQNFRCKNS 484
           S++ +E  + ++WF V+   CK S
Sbjct: 389 SDAEIEKLSTVYWFTVEFGLCKES 412


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 LATPAWNLARRSSGLMSRISGAKIVPESYTCLTT 512
           L+TP+ + A +SSGL S +S +   P      TT
Sbjct: 129 LSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTT 162


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 717 QWGNGTRTSW 746
           Q+GNG  TSW
Sbjct: 274 QFGNGLETSW 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,478
Number of Sequences: 336
Number of extensions: 3431
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)