Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A12
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   113   3e-26
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   1.8  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   2.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   4.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   4.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.4  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   9.5  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   9.5  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   9.5  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   9.5  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   9.5  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   9.5  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   9.5  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   9.5  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  113 bits (272), Expect = 3e-26
 Identities = 62/151 (41%), Positives = 77/151 (50%)
 Frame = -3

Query: 577 KVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 398
           KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL     +  + + A+
Sbjct: 164 KVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAI 223

Query: 397 SLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXX 218
           SL   YPTI S  HS+ N +KNL+                K F+ DPS F          
Sbjct: 224 SLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAA 281

Query: 217 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 125
                               SD+DMGFGLFD
Sbjct: 282 AAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = -2

Query: 749 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 591
           APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++
Sbjct: 107 APARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 610 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 735
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 263 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTE 442
           L  L+ G S+       SSDG    + + + ++  + SWV  ++R S  IS S  E+  +
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140

Query: 443 IFWFDVQNF 469
              FD++ F
Sbjct: 141 ---FDIEAF 146


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 567 APTLVTGLQDVYIVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 725
           AP L  G  D+ IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 92  APLLEKG--DI-IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 260  VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGT 439
            V   L D G   +  +C+ +D  ++++T    +     +++S    KS  + N   EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075

Query: 440  EI 445
            E+
Sbjct: 1076 EL 1077


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 284 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 424
           G FF  + CD + G K  +   N       S   N   K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -3

Query: 625 VLLKSSTMYTS*SPVTKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPE 446
           VL K  +   S  P  + G+     L    +SPFS  + +  +YD  T   P  L+I  +
Sbjct: 8   VLAKEESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQ 67

Query: 445 D 443
           +
Sbjct: 68  E 68


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 468 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLVTGLQDV 599
           S   +V +S TCL +    NGE+  +   ++S + T  T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 794 PSLRSVTNCWRTKSQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 621
           P+L  V     T S +P  P ++AP++    ++++GLG    +     SI T +   T
Sbjct: 340 PALSDVDENISTSS-SPRSPASLAPVNNSERSYDSGLGESLNNMHIGKSIATAVPVNT 396


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 603 IVDDFNSTL*NLGRDRKSL 659
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 154 DDDMGFGLFD 125
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,253
Number of Sequences: 5004
Number of extensions: 54768
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)