Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A12
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         97   1e-20
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.12 
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      30   2.5  
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   7.6  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.6  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/70 (64%), Positives = 57/70 (81%)
 Frame = -2

Query: 758 KSQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 579
           K  APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +
Sbjct: 88  KVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDE 147

Query: 578 QGWSF*SHPS 549
           +  +F + PS
Sbjct: 148 KLKAFLADPS 157


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +3

Query: 564 EAPTLVTGLQDVYIVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 725
           + P L +G  D+ I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 134 KVPLLESG--DI-IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 465 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLVTGLQD 596
           +S + +VP+SY    TRP  NG+   +  + A E P+L T  +D
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFED 202


>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 326 QKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEIFWFDVQNFR 472
           Q + +++  G+     SW+SN      +  + S++ G E F+ D+ + R
Sbjct: 545 QFIADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 583  PGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 687
            P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1847 PNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -3

Query: 574 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 407
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 406 AALSLAI 386
           A  +LAI
Sbjct: 142 ALTTLAI 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,719,330
Number of Sequences: 59808
Number of extensions: 434290
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)