Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A11
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    29   3.6  
At4g35110.2 68417.m04989 expressed protein                             28   6.3  
At4g35110.1 68417.m04988 expressed protein                             28   6.3  
At3g26350.1 68416.m03287 expressed protein  ; expression support...    28   6.3  

>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 498 TAASGGLVAGGKAAAESRSRSTTGEHGAGRXRVCRGAVSGKTSG 629
           T A+GG  AGG   A S + + T   G G      G VS  +SG
Sbjct: 467 TEANGGAAAGGSTEAGSGTSTETSSMGGG--SAAAGGVSESSSG 508


>At4g35110.2 68417.m04989 expressed protein
          Length = 386

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 685 PVRCRAQDRGRGGSSRGNVPDVFPETAP 602
           P+  R    GRGG + GN P V    AP
Sbjct: 66  PLSARPYQNGRGGFANGNSPKVHHSVAP 93


>At4g35110.1 68417.m04988 expressed protein
          Length = 386

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 685 PVRCRAQDRGRGGSSRGNVPDVFPETAP 602
           P+  R    GRGG + GN P V    AP
Sbjct: 66  PLSARPYQNGRGGFANGNSPKVHHSVAP 93


>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 603 GAVSGKTSGTLPRELPPRPRSWALHRTGTDPSHPTPPGL 719
           GA + +TS   P  +PP P     H   T P    PPG+
Sbjct: 27  GASTSQTSSNQPH-IPPIPHPKKSHHKTTQPHPVAPPGI 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,967
Number of Sequences: 28952
Number of extensions: 195636
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)