Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A10
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24750.1 68417.m03542 expressed protein                             31   0.68 
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.90 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    30   2.1  
At1g44740.1 68414.m05125 expressed protein ; expression supporte...    29   2.7  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   4.8  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   4.8  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    28   8.3  
At1g64340.1 68414.m07291 hypothetical protein                          28   8.3  

>At4g24750.1 68417.m03542 expressed protein 
          Length = 260

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 85  LYRAQHPARNGSRLQTIPSP--DIELSYIRTFGAVMHVLRKKTDSIDLRDPNGLRRRVSR 258
           L+R QH     S + ++ SP     LS +R FG  +  ++   + IDL+    +     R
Sbjct: 19  LFRNQHSRMTSSMVSSLKSPIGGTSLSTVRRFGVGVVRMQAVDEDIDLKQMRDIAAAKKR 78

Query: 259 FECETRLVKSHCLEPPDSRGSTVSIS 336
           ++   R  K   L P ++ G  +S+S
Sbjct: 79  WDGLLREGKVKLLTPREA-GYAISLS 103


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 670 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 563
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 533 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 357
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 356 SLAESGKD 333
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 612 ADIEGSKSNVAMNAWLPQASYPW 680
           AD+ GS  NV M AW P+    W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVW 144


>At1g44740.1 68414.m05125 expressed protein ; expression supported
           by MPSS
          Length = 311

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = -3

Query: 349 PNPARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGD----RCYRFFFLTRAS 182
           PNP R    W  + R+ +NN  L        A+R+ E  L +G+    + +     +  S
Sbjct: 91  PNPIR----WE-KHRDVINNTRL--------AKRNRETDLGQGEVDSFKLHNSIKFSCGS 137

Query: 181 RLRRSGYNSVRCRGSE*SVDDFR 113
           ++RR  YN   C G+  ++DD R
Sbjct: 138 KMRRRRYNVSTCGGASLAIDDVR 160


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 481  VILLSTRGTAVSDIWFMRS-AERPVVRSYHPRDY 383
            V+ +  RG+  SD+W  R   ++P+  S +PR Y
Sbjct: 1141 VVCVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSY 1174


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 481  VILLSTRGTAVSDIWFMRS-AERPVVRSYHPRDY 383
            V+ +  RG+  SD+W  R   ++P+  S +PR Y
Sbjct: 1169 VVCVVDRGSRSSDLWVWRKYGQKPIKSSPYPRSY 1202


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 24  LSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 203
           ++ D S GAG   +RS+HD    S      + S  + S        + D   R++ V K 
Sbjct: 557 INHDRS-GAGSRSSRSEHDKVTLSKATAMRQNSMKEVSLASEMEVNFNDYSHRNSGVSKD 615

Query: 204 NR*HRSPRSKWASTSRLAF 260
            +  R+ +S +AS  + +F
Sbjct: 616 QQ-QRAKKSGFASIVKKSF 633


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 752 DCESTAYRSFSIKSF*QEVPEKLPPGITGLWQPSVHS 642
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,767
Number of Sequences: 28952
Number of extensions: 370622
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)