Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A09
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   151   1e-37
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   147   2e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        27   2.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  151 bits (365), Expect = 1e-37
 Identities = 72/109 (66%), Positives = 82/109 (75%)
 Frame = -2

Query: 696 GXTXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 517
           G T IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L
Sbjct: 97  GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSIL 156

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
             VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 157 NHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = -1

Query: 760 VFVISSRPFGQRAVLKFAAHTRXYAYCGTF 671
           V V+S+R +G RAVLKFAAHT   A  G F
Sbjct: 76  VCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  147 bits (356), Expect = 2e-36
 Identities = 71/109 (65%), Positives = 81/109 (74%)
 Frame = -2

Query: 696 GXTXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 517
           G T IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L
Sbjct: 98  GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSIL 157

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
             VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 158 NHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = -1

Query: 760 VFVISSRPFGQRAVLKFAAHTRXYAYCGTF 671
           V VISSRP+G RAVLKFAAHT   A  G F
Sbjct: 77  VCVISSRPYGHRAVLKFAAHTGATAIAGRF 106


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 624 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 445
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 444 AR 439
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 352 LQGSRLEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 495
           L G+R+ +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,048
Number of Sequences: 5004
Number of extensions: 56389
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)