Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A08
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.80 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           24   1.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.8  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 207 DGTEAGR--RVRQAARPRLQHGPPRLEPPRSNYSFAGA 314
           D   +GR  R R+  +P  + G P  E  R   +F+GA
Sbjct: 201 DRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGA 238


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 378 QGPSXGAPASKHAASKETVR 437
           QGPS G  ASK  +  ET+R
Sbjct: 123 QGPSTGRGASKKLSKVETLR 142


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 RHPRSRPTQSARTGRTASTVRRP 222
           RH +SR  +  +TGR   T R P
Sbjct: 209 RHNQSRSKRQPKTGREDQTRRNP 231


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 258 QHGPPRLEPPRSNYSFAGAPFPPRTKVASP 347
           Q GPP  +PP       G   P  T  A P
Sbjct: 200 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 229


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 258 QHGPPRLEPPRSNYSFAGAPFPPRTKVASP 347
           Q GPP  +PP       G   P  T  A P
Sbjct: 202 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 231


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 44  DEEDTAEHAKKKKK 3
           ++EDT +  KKKKK
Sbjct: 254 EDEDTKKEDKKKKK 267


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 310 PAKE*FERGGSNLGGPCW 257
           P  E F  GG  +  PCW
Sbjct: 369 PKGEIFHMGGDEVYIPCW 386


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 365 APPPPGSQXWRPGEQARRLEGDGAVSS 445
           +PP P +    P  ++R+L  +  VSS
Sbjct: 70  SPPSPPAPSELPALKSRKLNNNNVVSS 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,316
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)