Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A08
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   2.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    26   6.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   8.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPP 350
           PP   PPRSN +    P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 335 GRFATGNRQRAPPPPGSQXWRP-GEQARRLEGD 430
           G+F  G   RAPPPP ++   P  E+   +E D
Sbjct: 684 GKFEEGTGGRAPPPPPAEEVAPENEEVETMEID 716


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 276  LEPPRSNYSFAGAPFPPRTKVASPP 350
            L PPRS  S +G P P  T V  PP
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 510 PDPQERRGAADVRSARSRSGRSEDTAPSPSRRRACSPGRXHWDPGGG 370
           P P     AA    A S S  +   AP+ S+ RA       + P GG
Sbjct: 62  PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 306  AGAPFPPRTKVASPPV-IGSERLRLQGPSXGAPASKHAASKETVRYPRIA 452
            +GAP  P+  VA+PPV + S    +  PS  AP     +    V  P +A
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA 1167


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 309 GAPFPPRTKVASPPVIGSERLRLQG 383
           G PFP   ++A+  ++G+ R+ LQG
Sbjct: 209 GIPFPQAQELAAQTMVGTGRMVLQG 233


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 228 RVRQAARPRLQHGP--PRLEPPRSNYSFAGAPFPPRTKVASPPVIGS 362
           R RQ  R R    P  PR+  P   Y+     +PP T  A P   GS
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGS 290


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -1

Query: 516 PRPDPQERRGAADVRSARSR--SGRSEDTAPSPSRRRACSP 400
           P   P  +RG    R  R    SGR    +PSP   R+ SP
Sbjct: 88  PPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSRSP 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,892
Number of Sequences: 5004
Number of extensions: 39469
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)