Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A08
(891 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 33 0.31
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 31 1.7
SB_52772| Best HMM Match : rve (HMM E-Value=0.001) 29 3.8
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 3.8
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 29 5.1
SB_10322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016) 29 6.7
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 29 6.7
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 6.7
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 8.8
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 28 8.8
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013) 28 8.8
SB_18690| Best HMM Match : zf-CCHC (HMM E-Value=0.0035) 28 8.8
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 28 8.8
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 28 8.8
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 350 GNRQRAP--PPPGSQXWRPGEQARRLEGDGAVSSDRPDRDRALRTSAAPRRSCG 505
G R P P PG RPG R + D S DR DRDR R+ P R G
Sbjct: 428 GGPPRGPMGPGPGMPPMRPG----RFDHDSEHSRDRADRDRLARSFDRPHRGYG 477
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 33.1 bits (72), Expect = 0.31
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = +3
Query: 234 RQAARP--RLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPAS 407
+QAAR R +G P L P R G P PP+ + PP+ G+ LR PS + S
Sbjct: 446 QQAARINYRASYGAPPLPPKRGG----GPPLPPK-RGGGPPLFGAMALRTGAPSKASKPS 500
Query: 408 --------KHAASKETVRYPRIALT 458
A S + +PR+A T
Sbjct: 501 FGGRGQPQVFATSASEILHPRLART 525
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 99 KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQA-ARPRLQHGPPR 275
K P K T+AG+ + P+ + + A +++++ + + R + ++PR QH P
Sbjct: 851 KEPPKPTLAGEKM-SPQPQLTMTAPKSKQQSQSIATEQLNSQRTSQPTLSQPRSQHPPKA 909
Query: 276 LEPPRSNYSFAGAPFPPRTKV 338
+ P ++ +S P + +V
Sbjct: 910 MAPEQTLFSQPSTPLDHKEEV 930
>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
Length = 646
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 344 ATGNRQRAPPPPGSQXWRPG--EQARRLEGDGAVSSDRPDRDRALRTSAAPRRSCGSGRG 517
A R R+P PP ++ PG E RRL ++ + + R +++ AP S GR
Sbjct: 78 ALAERIRSPEPPATRPKHPGRVEAGRRLAKWNRINRAKKETLRVVQSPLAPGPSEPQGRE 137
Query: 518 TIR 526
+R
Sbjct: 138 GLR 140
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 29.5 bits (63), Expect = 3.8
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Frame = +3
Query: 144 PEGEASAVAAHPVRENRADRLDGTEAGRR---VRQAARP--RLQHGPPRLEP-PRSNYSF 305
P G +A P R A R G G R V + P R + P R P P +
Sbjct: 341 PAGRGAATRGAPARGGVATRGRGAATGARGGAVSPSKTPAARGKPSPARGGPSPARGVAT 400
Query: 306 AGAP---FPPRTKVASPPVIGSERLRLQGPSXGAPASKHAASK 425
GA P K + PP + + PASK AA+K
Sbjct: 401 RGAAKTASPAAAKTSGPPAKSASNHKCSPAKPSTPASKDAAAK 443
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 528 PRMVPRPDPQERRGAADVRSARSRSGRSEDTAPSP 424
P PRP PQ+ RG D R + E + P P
Sbjct: 391 PAHNPRPGPQDPRGPQDRRPPNEQPRSQEGSGPKP 425
>SB_10322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 528 PRMVPRPDPQERRGAADVRSARSRSGRSEDTAPSPSRRRACS 403
P M+P+ P + R D + + R+ D SRR C+
Sbjct: 21 PEMIPKSTPTDPRTRTDTEESPKSTPRNCDNGQRESRRNTCN 62
>SB_7926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 374 PPGSQXWRPGEQARRLEGDGAVSSDR--PDRDR 466
P GS+ + G++A R GDGA R PD+D+
Sbjct: 110 PKGSKVTKGGKRAPRFAGDGASERSRLTPDKDK 142
>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
Length = 491
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 239 LADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCH 60
+ P R R V W D C ++++ M+ GC G Y++K+ T
Sbjct: 359 MTQPHPDARDGVVQRTVCFHW---DGDCCHYQVSIMV--RGCLGYYVYKLPSVNFTINAR 413
Query: 59 HCAD 48
+CAD
Sbjct: 414 YCAD 417
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 189 NRADRLDGTEAGRRVRQAARPRLQHGPPRLEPP 287
+R+DR D A RR RPRLQ PR +PP
Sbjct: 545 DRSDRYDDHGADRRDAPKERPRLQL-QPRTKPP 576
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 160 PRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRA 291
PRS Q++R + ST+ R D A R ++ST R +A
Sbjct: 589 PRSTDAQASRAATSNSTIPRSTDAQASRAATSNSTIPRSTDAQA 632
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +3
Query: 87 GYFEKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 266
G+F + + G P G + + PVR R+ L E R R +R R +
Sbjct: 96 GHFARDCTRRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSL---ERRSRSRSGSRER-RRS 151
Query: 267 PPRLEPPRSNYSFAGAP 317
P R R SF+ +P
Sbjct: 152 PSRSPERRRERSFSNSP 168
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 504 PQERRGAADVRSARSRSGRSEDTAPSPSRRRACSPGRXHWDPGGGGARCRLPV 346
P+ A RS S G+ +D +P P R R SP R GG+R PV
Sbjct: 1902 PRSNHSALGSRSRPSSPGQ-QDQSPRPGRSRVNSPSRDS-RRSSGGSRPPSPV 1952
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPPV 353
PP +PP NYS GA PR A PP+
Sbjct: 182 PPYCQPPPGNYSGYGA-MDPRQGGAQPPM 209
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 525 RMVPRPDPQERR---GAADVRSARSRSGRSEDTAPSPSRRRACSPGRXHWDPGGGGAR 361
R PR + RR + + R+ + ++ RSE + S +R+ SPG PG GG+R
Sbjct: 157 REEPRRENARRRKDSSSENERANKPKTRRSETRSSRQSNQRSSSPGDA--SPGRGGSR 212
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 504 PQERRGAADVRSARSRSGRSEDTAPSPS-RRRACSPGR 394
P++RR + + RS R PSPS RRR+ SP R
Sbjct: 548 PRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 231 VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPV 353
V A P + PPR PP++ P PP +V+ PP+
Sbjct: 144 VHGLAHPSITQPPPRHSPPQTPVP-PPPPLPPFAQVSLPPL 183
>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
Length = 406
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 510 PDPQERRGA--ADVRSARSRSGRSEDTAPSPSRRRACSPGR 394
PD Q R G+ AD R R +SG D++ P R + S R
Sbjct: 286 PDQQARDGSQEADSRPQRQKSGDQTDSSNKPQRTLSASEKR 326
>SB_18690| Best HMM Match : zf-CCHC (HMM E-Value=0.0035)
Length = 361
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 540 LYGAPRMVPRPDPQERRGAADVRSARSRSGRSEDTAPSPSRRRACS 403
LYG P M+P+ P + R D + + R+ SRR C+
Sbjct: 316 LYG-PEMIPKSTPTDPRTRNDTEESPKSTPRNCSNGQRESRRNTCN 360
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPPV 353
PP +PP NYS GA PR A PP+
Sbjct: 182 PPYCQPPPGNYSGYGA-MDPRQGGAQPPM 209
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +1
Query: 142 SRKVRHPRSRPTQSARTGRTASTVRR------PADGSAKRR 246
SRKV+ PR R T +A G + +VRR P G KRR
Sbjct: 144 SRKVKAPRKRSTGNAGRGGASQSVRRSRVDPEPPAGFRKRR 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,154,885
Number of Sequences: 59808
Number of extensions: 413853
Number of successful extensions: 2061
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2049
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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