Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A08
(891 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30835.1 68414.m03770 expressed protein 32 0.59
At1g13920.1 68414.m01633 remorin family protein contains Pfam do... 32 0.59
At1g77400.1 68414.m09013 expressed protein 30 2.4
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai... 30 2.4
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai... 30 2.4
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 30 2.4
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 3.1
At5g24580.2 68418.m02903 copper-binding family protein similar t... 29 4.1
At5g24580.1 68418.m02902 copper-binding family protein similar t... 29 4.1
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 29 4.1
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 29 4.1
At5g60840.1 68418.m07632 expressed protein predicted protein, Dr... 29 5.5
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 29 5.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 5.5
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 5.5
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 29 5.5
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 28 7.2
At1g23060.2 68414.m02882 expressed protein Location of EST gb|T2... 28 7.2
At1g23060.1 68414.m02883 expressed protein Location of EST gb|T2... 28 7.2
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 9.6
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 9.6
At1g25550.1 68414.m03172 myb family transcription factor contain... 28 9.6
>At1g30835.1 68414.m03770 expressed protein
Length = 132
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 240 AARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPASKHAA 419
A++ + P L P++N S G P PR + +SP E +L S P + H+
Sbjct: 20 ASKSHRKLSPRDLSEPKTNLSGKGGPPQPRPRTSSPQQARRETSKLTFNSTDEPLN-HSK 78
Query: 420 SKETVR 437
S T R
Sbjct: 79 SNHTFR 84
>At1g13920.1 68414.m01633 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 345
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPASKHAASKE 428
PPR++PP S AP PP PP++ LRL +S+H + K+
Sbjct: 188 PPRIQPPLRTRSEPRAPPPP-----PPPLLSPSPLRLPPRETKRQSSEHTSRKD 236
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPASKHAASKE 428
P +L+PPR+ S +G + P S P SER +L P+ P S+ S +
Sbjct: 93 PSKLKPPRTPSSLSGF-YSPGPSFRSSPRAFSERWQLHRPNRIRPESEPEPSSD 145
>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 460
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Frame = +2
Query: 308 RGALPP*NEGRFATGNRQRAPPPPGSQXWRPGEQARRLEGDG-AVSSDR---PDRDRALR 475
RG PP N G F R+ +PP G + DG + S R P RD R
Sbjct: 175 RGRSPPRNAGSFIGIPREPSPPRNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRR 234
Query: 476 TSAAPRRSCGSGRGTIRGAPYSXIXRXTPNXXGXRAT*XGPP 601
+S G + G+P R P G R GPP
Sbjct: 235 FGPPRDQSPPRNAGRVTGSPRD---RSPPRNAGRR---MGPP 270
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 249 PRLQHGPPRLEPPRSNY-SFAGAPFPPRTKVASP-PVIGSERLRLQGPSXGAPASK 410
PR G R PPRSN F G ASP PV G L Q PS GAP ++
Sbjct: 311 PRSYMGSSRGSPPRSNIEDFHGRSRMLDNMRASPYPVRGV--LNGQAPSSGAPFAR 364
>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
domain-containing protein contains Pfam profile PF00536:
SAM domain (Sterile alpha motif)
Length = 456
Score = 29.9 bits (64), Expect = 2.4
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Frame = +2
Query: 308 RGALPP*NEGRFATGNRQRAPPPPGSQXWRPGEQARRLEGDG-AVSSDR---PDRDRALR 475
RG PP N G F R+ +PP G + DG + S R P RD R
Sbjct: 175 RGRSPPRNAGSFIGIPREPSPPRNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRR 234
Query: 476 TSAAPRRSCGSGRGTIRGAPYSXIXRXTPNXXGXRAT*XGPP 601
+S G + G+P R P G R GPP
Sbjct: 235 FGPPRDQSPPRNAGRVTGSPRD---RSPPRNAGRR---MGPP 270
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 249 PRLQHGPPRLEPPRSNY-SFAGAPFPPRTKVASP-PVIGSERLRLQGPSXGAPASK 410
PR G R PPRSN F G ASP PV G L Q PS GAP ++
Sbjct: 311 PRSYMGSSRGSPPRSNIEDFHGRSRMLDNMRASPYPVRGV--LNGQAPSSGAPFAR 364
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 73 VGSLPAILKRYRPKQPWPVN---ICVSRKVRHPRSRPT 177
VG PAI++ +RP WP V KVR+ + PT
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPT 1283
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 282 PPRSNYSFAGAPFPPRTKVASPPVIGSER 368
PPRS+ +A P PPRT S VI S R
Sbjct: 775 PPRSSSPYARRPSPPRTSGFSRSVIDSLR 803
>At5g24580.2 68418.m02903 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 318
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -1
Query: 525 RMVPRPDPQERRGAADVRSARSRSGRSEDTAPSPSRRR---ACSPGRXHWDPGGG 370
R+VP+PDP+ AA + SG + P + G + + GGG
Sbjct: 207 RIVPQPDPEPEAPAAAQEEKKEESGEGNEKPPETGEEKEEEKKKEGEENGEEGGG 261
>At5g24580.1 68418.m02902 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 319
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -1
Query: 525 RMVPRPDPQERRGAADVRSARSRSGRSEDTAPSPSRRR---ACSPGRXHWDPGGG 370
R+VP+PDP+ AA + SG + P + G + + GGG
Sbjct: 208 RIVPQPDPEPEAPAAAQEEKKEESGEGNEKPPETGEEKEEEKKKEGEENGEEGGG 262
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 249 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPP 350
P + PP PP + AP PP T + PP
Sbjct: 113 PSTPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPP 146
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPP--RTKVASPPVIGSERLRLQGP 386
PP ++PP N ++ G P PP PP + QGP
Sbjct: 216 PPHIQPPNMNQNYRGPPPPPNMNQNYQGPPAPNMNQ-NYQGP 256
>At5g60840.1 68418.m07632 expressed protein predicted protein,
Drosophila melanogaster
Length = 207
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 249 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGS 362
P+++H PP+ +P + P PP K+ ++ S
Sbjct: 15 PQVEHSPPQEKPGNAELFSPAPPSPPPPKITMMDIVNS 52
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 112 KQPWPVNICVSRKVRHPRSRPTQSARTGRTASTVR 216
+ P PV +CV R R P P ++R R TVR
Sbjct: 338 RPPSPVVLCVPRAPRPPPPSPVSNSRARRGFPTVR 372
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.7 bits (61), Expect = 5.5
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Frame = +3
Query: 138 RQPEGEASAVAAHPVRENRA----DRLDGTEAGRRVRQAARPRLQHGP-PRLEPPRSNYS 302
R P A+++ A P R + A R A A RP P PR +PPR +
Sbjct: 229 RPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPRPTTPKPPSPRSDPPRLDAP 288
Query: 303 FAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPASKHAASK 425
P PP + SP + R + P P +A+K
Sbjct: 289 RPTTPKPPSPRSVSPRAV-QRREIVYRPEPTLPVQHASATK 328
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.7 bits (61), Expect = 5.5
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Frame = +3
Query: 138 RQPEGEASAVAAHPVRENRA----DRLDGTEAGRRVRQAARPRLQHGP-PRLEPPRSNYS 302
R P A+++ A P R + A R A A RP P PR +PPR +
Sbjct: 228 RPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLDAPRPTTPKPPSPRSDPPRLDAP 287
Query: 303 FAGAPFPPRTKVASPPVIGSERLRLQGPSXGAPASKHAASK 425
P PP + SP + R + P P +A+K
Sbjct: 288 RPTTPKPPSPRSVSPRAV-QRREIVYRPEPTLPVQHASATK 327
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 352 TGGEATFVLGGKGAPAKE*FERGGSNLGG 266
+GG+ ++ GG G A++ + GG N+GG
Sbjct: 193 SGGDGCYMCGGVGHFARDCRQNGGGNVGG 221
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 516 PRPDPQERRGAADVRSARSRSGRSEDTAPSPSRRRACSP 400
P P GA + S +T+PSPSR R+ SP
Sbjct: 58 PPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASP 96
>At1g23060.2 68414.m02882 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 306
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 139 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRAR 294
V RK + ++RP + R T A AK RD SST D SL R
Sbjct: 204 VVRKALNLKARPLPKSTQARPQHTSTGQAKAKAKARDDHSSTASCDRSLTNR 255
>At1g23060.1 68414.m02883 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 367
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 139 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRAR 294
V RK + ++RP + R T A AK RD SST D SL R
Sbjct: 265 VVRKALNLKARPLPKSTQARPQHTSTGQAKAKAKARDDHSSTASCDRSLTNR 316
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 443 SDRPDRDRALRTSAAPRRSCGSGRGTIRGAPYSXIXRXTPN 565
S PDR R+L SA+P GRG + Y+ R +P+
Sbjct: 658 SPPPDRRRSLSRSASPNGRIRRGRGFSQRFSYARRYRTSPS 698
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 267 PPRLEPPRSNYSFAGAPFPPRTKVASPP 350
PP PP Y + P PP T V+SPP
Sbjct: 576 PPPHSPPPPIYPYLSPP-PPPTPVSSPP 602
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 172 PTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS 282
PT + T TA TV + +++ H++ RR WS
Sbjct: 179 PTSTTTTSSTAETVGGGKEFEEQKQSHSNRKQRRCWS 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,269
Number of Sequences: 28952
Number of extensions: 276284
Number of successful extensions: 1183
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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