Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A07
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    31   0.19 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   7.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.4  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
 Frame = +2

Query: 44  IEPRHRTELYPDLRSRDARVKK-----KTDSI-DLRDPNGLRRRVSRFECETQLVKSHCL 205
           + P  R  L P+ R    RV       +T +I  ++DP  L  R  + EC TQ+V ++ L
Sbjct: 60  LTPTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLSDRRYQQECATQVV-NYLL 118

Query: 206 EPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFXXXXXXXXXXTKCPKLRFLSY 376
           E   S+   ++     S R  +A+    +N  D +F          T C  L+ L+Y
Sbjct: 119 ESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEEDVTTC--LKALNY 173


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 26/112 (23%), Positives = 42/112 (37%)
 Frame = -2

Query: 390 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 211
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 210 GSKQCDFTSCVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC 55
                DF + +S S+    ++S  G  R            R R +G NS  C
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDC 371


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 657  SPYAY*TSGSSQLLPFCSTRGF 722
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 396 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 247
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 324 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 199
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,879
Number of Sequences: 5004
Number of extensions: 57871
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)