Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A07
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.87 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.5  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    30   2.0  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    29   4.6  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   4.6  
At1g64340.1 68414.m07291 hypothetical protein                          28   8.1  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 578 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 471
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 441 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 265
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 264 SLAESGKD 241
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 520 ADIEGSKSNVAMNAWLPQASYPW 588
           AD+ GS  NV M AW P+    W
Sbjct: 122 ADVNGSSHNVLMEAWKPRVKSVW 144


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 255 ESGKDMLTVEPRESGGSKQCDFTSCVSHSKRETRRRSPFGSRRSMLSV 112
           +SG   +T  P ++ GS+  + T C S  KR  +  S   ++ ++L +
Sbjct: 540 DSGTSGVTSRPEQASGSRSSEDTICSSSQKRPKKEGSFLNNKVTLLDL 587


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 702 RAKAGLIQMFSTHRDCESTAYRSFSIK 622
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 660 DCESTAYRSFSIKSF*QEVPEKLPPGITGLWQPSVHS 550
           DCEST Y SF + SF +++   +      +  P + S
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,505
Number of Sequences: 28952
Number of extensions: 322145
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)