Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A05
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 228 9e-61
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 228 9e-61
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 29 0.84
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.84
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.9
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 26 7.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 228 bits (557), Expect = 9e-61
Identities = 109/175 (62%), Positives = 129/175 (73%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VT+GKG +G T+RW TK+LPR TH G K C GAWHP+ V +TVARAG GY HRT++
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRGLR-KVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 279 NSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGP 331
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 332 VKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCIVSPRAKDTK-VSLLVGTQR 581
KV+WAREH EK + + S F Q+EMID I R K + + GT+R
Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 228 bits (557), Expect = 9e-61
Identities = 109/175 (62%), Positives = 129/175 (73%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VT+GKG +G T+RW TK+LPR TH G K C GAWHP+ V +TVARAG GY HRT++
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRGLR-KVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP
Sbjct: 279 NSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGP 331
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 332 VKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCIVSPRAKDTK-VSLLVGTQR 581
KV+WAREH EK + + S F Q+EMID I R K + + GT+R
Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.84
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWH--PSRVSFTVARAGQKGYHHRT 459
+TKGKG+ GV RW + P + PSRV AG G+ RT
Sbjct: 156 ITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSRT 215
Query: 458 EMNKKIYRI 432
N ++ +
Sbjct: 216 VKNLLVWAV 224
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 497
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 366 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 351 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 603 DTFVSFALGDTMQSIISSWANTESTGIGFSRCSLAHFTLXS 725
D F + + DT+ I+ + T+ T IGFS+ + F S
Sbjct: 193 DDFAQYDIPDTIDYILKTSGQTKLTYIGFSQGTAQAFASLS 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,716
Number of Sequences: 5004
Number of extensions: 65882
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -