Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A05
(859 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 172 4e-43
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 140 2e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 29 6.4
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 29 6.4
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 29 6.4
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 6.4
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 6.4
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 29 6.4
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.4
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 8.5
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 172 bits (418), Expect = 4e-43
Identities = 78/97 (80%), Positives = 85/97 (87%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VTKG G+KGVT RW TKKLPR TH G K C GAWHP+RVSF+VARAGQ GYHHRTE+
Sbjct: 222 VTKGHGFKGVTYRWGTKKLPRKTHKGLR-KVACIGAWHPARVSFSVARAGQAGYHHRTEL 280
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 342
NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 281 NKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCI 635
KV W RE LE P PV VF+ DEMID I
Sbjct: 193 KVDWCRERLENPAPVRKVFSPDEMIDVI 220
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 140 bits (338), Expect = 2e-33
Identities = 62/82 (75%), Positives = 70/82 (85%)
Frame = -3
Query: 341 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 161 RFQTPADKAAFMGTLKKDRIRE 96
RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 2e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -3
Query: 476 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 342
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 433 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
LDK MA + HLLS+T RNP LH++E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 416 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 291
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 59 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 123
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 75 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 430 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 332
D T +MA + HLLS+T RNP LH++E++
Sbjct: 979 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 159 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 34
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,501,083
Number of Sequences: 59808
Number of extensions: 527084
Number of successful extensions: 1102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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