Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_A05
(859 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 233 1e-61
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 233 1e-61
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 231 4e-61
At3g31410.1 68416.m04010 hypothetical protein similar to hypothe... 35 0.080
At3g32140.1 68416.m04093 hypothetical protein contains Pfam prof... 34 0.11
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 4.0
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 4.0
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 9.1
At4g02680.1 68417.m00363 tetratricopeptide repeat (TPR)-containi... 28 9.1
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 9.1
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 233 bits (569), Expect = 1e-61
Identities = 109/174 (62%), Positives = 130/174 (74%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VTKGKGY+GV +RW +LPR TH G K C GAWHP+RVS+TVARAGQ GYHHRTE+
Sbjct: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGLR-KVACIGAWHPARVSYTVARAGQNGYHHRTEL 281
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
NKKIYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GP
Sbjct: 282 NKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGP 335
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
KKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 336 KKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCIVSPRAK 617
KV +A EK IP+++VF +DEMID I + K
Sbjct: 194 KVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 233 bits (569), Expect = 1e-61
Identities = 109/174 (62%), Positives = 130/174 (74%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VTKGKGY+GV +RW +LPR TH G K C GAWHP+RVS+TVARAGQ GYHHRTE+
Sbjct: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGLR-KVACIGAWHPARVSYTVARAGQNGYHHRTEL 281
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
NKKIYR+G K G + A TEYD +EK +TPMGGFPHYG V +D++MIKGCC+GP
Sbjct: 282 NKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGP 335
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
KKR++TLR+SL T R ALE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 336 KKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCIVSPRAK 617
KV +A EK IP+++VF +DEMID I + K
Sbjct: 194 KVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 231 bits (565), Expect = 4e-61
Identities = 109/174 (62%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Frame = -3
Query: 632 VTKGKGYKGVTSRWHTKKLPRXTHXGFXXKFPCXGAWHPSRVSFTVARAGQKGYHHRTEM 453
VTKGKGY+GV +RW +LPR TH G K C GAWHP+RVS+TVARAGQ GYHHRTEM
Sbjct: 223 VTKGKGYEGVVTRWGVTRLPRKTHRGLR-KVACIGAWHPARVSYTVARAGQNGYHHRTEM 281
Query: 452 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 273
NKK+YR+G K G+ ++A TEYD +EK ITPMGGFPHYG V D++MIKGCC+GP
Sbjct: 282 NKKVYRVG-----KVGQET-HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGP 335
Query: 272 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 114
KKR++TLR++L T R A+E+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 336 KKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 718 KVKWAREHLEKPIPVDSVFAQDEMIDCIVSPRAK 617
KV +A EK +PVD++F +DEMID I + K
Sbjct: 194 KVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227
>At3g31410.1 68416.m04010 hypothetical protein similar to
hypothetical protein GB:CAB77996 GI:7267513 from
[Arabidopsis thaliana]
Length = 315
Score = 34.7 bits (76), Expect = 0.080
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = -1
Query: 736 GVPXEXKVKWAREHLEKPIPVDSVFAQ---DEMIDCIVSPRAKD 614
G P KVK+ + HL K +D+++A+ ++IDCIV+PR ++
Sbjct: 232 GCPRMCKVKFKKNHL-KGFTLDTIYAELGTTQVIDCIVTPRIEE 274
>At3g32140.1 68416.m04093 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 174
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = -1
Query: 736 GVPXEXKVKWAREHLEKPIPVDSVFAQ---DEMIDCIVSPRAKDTKV 605
G P KVK+ + HL K +D+++A+ +IDCIV+PR ++ ++
Sbjct: 79 GCPRMCKVKFKKNHL-KGFTLDTIYAELGTTHVIDCIVTPRIEEQEL 124
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -3
Query: 353 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 183
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340
Query: 182 SSKFGHGRFQTPADKAAFMGTLKKD 108
+ +G DK++ G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 473 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 321
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 205 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 110
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At4g02680.1 68417.m00363 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 888
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 513 RRMPSSXAGKFPXKPXVCLTG*LLCVPTRSDTFVSFALGDTMQSIISSWANTESTGIGFS 692
R S+ AGK P CL+ +C+ RSD + F ++ ++ N +GF
Sbjct: 331 RSQVSTMAGKAPFSLYSCLSEVSMCIDPRSDRTLGF-----LEKLVDFAENDRQQVLGFH 385
Query: 693 R 695
R
Sbjct: 386 R 386
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 579 LLCVPTRSDTFVSFALGDTMQSIISSWANTESTGIGFSRCSL 704
L C+ + V ALG+ S +S WA+ FSRC L
Sbjct: 1437 LYCLMLATKNSVKNALGERTASTLSRWASL-MAATAFSRCGL 1477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,343
Number of Sequences: 28952
Number of extensions: 355433
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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