Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A02
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   8.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 622 WMLXLGWLVYGIGDLMI 672
           W+  L W  YG G LMI
Sbjct: 587 WLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 622 WMLXLGWLVYGIGDLMI 672
           W+  L W  YG G LMI
Sbjct: 587 WLSFLSWFRYGNGALMI 603


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 95  RKKHGEDLPTGGRSRRKGEKLE*MQREEQFCCP*EP 202
           ++K  +D   GG S +K      + ++ Q+C P  P
Sbjct: 557 KRKRKQDPADGGNSMKKCRARYGLDQQNQWCKPCRP 592


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 95  RKKHGEDLPTGGRSRRKGEKLE*MQREEQFCCP*EP 202
           ++K  +D   GG S +K      + ++ Q+C P  P
Sbjct: 449 KRKRKQDPADGGNSMKKCRARYGLDQQNQWCKPCRP 484


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 528 PSSLGMXKGVSPPYFQVNDESQASRLIS 445
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 21  PNSVGVSNEVSLPQFKVLGHRQRAMEIS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,166
Number of Sequences: 336
Number of extensions: 3235
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)