Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A02
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491...    30   1.9  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.3  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.7  
04_04_0772 + 27970494-27972875                                         28   7.6  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   10.0 

>01_06_0747 -
           31645136-31646521,31647870-31648142,31649080-31649148,
           31649486-31649614
          Length = 618

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/70 (30%), Positives = 27/70 (38%)
 Frame = -2

Query: 720 PXXSSHPPXXXRXHQPDHQIPDSIHQPPQX*HPXXINPLTPX*KEFAPGLKPPLSSEAPS 541
           P     PP   +  Q + Q+P    QP Q  HP   N + P      P  +P  S   P 
Sbjct: 389 PNAQQFPPPPVQPQQSNTQLPPQAMQPQQ--HPPVQNQMRPQTPPNYPHYQPHQSLNPPP 446

Query: 540 AYLTPSSLGM 511
             L P S+ M
Sbjct: 447 ETL-PGSMAM 455


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 80  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>04_04_0772 + 27970494-27972875
          Length = 793

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 443 RLIRREACDSSFTWK*GGETPLXMPSDEGVRYADGASDDNGGFNPGANSFXYGV 604
           +LI   +   S  WK  G     +P +EG      +S   G F PGAN   Y V
Sbjct: 206 KLIGARSYFESAKWKWKGLRDPVLPINEGQHGTHTSSTAAGSFVPGANVSGYAV 259


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,507,176
Number of Sequences: 37544
Number of extensions: 396903
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)