Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A02
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.4  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.8  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   7.7  

>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 585  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 442
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 356 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 186
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 185 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 72
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 236  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 90
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +2

Query: 26  AMKLTTQNS-EE*GIKILRRLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREE 178
           +M+ +TQN  EE G  ++  ++R+  KH ED PT  R + K E+LE  +++E
Sbjct: 300 SMQQSTQNEGEEKGDAVIACIRRA--KHYEDTPTQSR-KWKREELEVSRQKE 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,198,489
Number of Sequences: 59808
Number of extensions: 410848
Number of successful extensions: 1020
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)