Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_A01
         (1182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.7  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 20/51 (39%), Positives = 21/51 (41%)
 Frame = +3

Query: 42  GGTXRGXXGKTXXAXXRGXTXGGXAGGGXXRGXGXXGGXXXRXRXRGXEGG 194
           GG+  G  G        G   GG  GGG  RG G  GG   R   RG  GG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGG--RG-GARGGRGGRGGARGGRGG 59



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 19/64 (29%), Positives = 20/64 (31%)
 Frame = +3

Query: 42  GGTXRGXXGKTXXAXXRGXTXGGXAGGGXXRGXGXXGGXXXRXRXRGXEGGXXRKGXGKX 221
           GG      G+      RG   GG  GG      G  G    R    G  GG   KG  K 
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG--AKGGAKV 73

Query: 222 XXPP 233
              P
Sbjct: 74  IIEP 77


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/54 (27%), Positives = 17/54 (31%)
 Frame = -3

Query: 202 RSXPPSXPRXLXLXXXPPSXPXPRXXPPPAXPPXVXPRXXAXSVFPXXPLXVPP 41
           +S PP  P  +     P   P P   P    PP   P        P  P   PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 208  PXRSXPPSXPRXLXLXXXPPSXPXPRXXPPPAXPPXVXPRXXAXSV 71
            P +   P+ P        PPS P     PP A PP + P   A SV
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL-PASSAPSV 1743



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
 Frame = -3

Query: 208  PXRSXPPSXPRXLXLXXXPP--SXPXPRXXPP-PAXPPXVXPRXXAXSVFPXXP 56
            P R    + P+       PP  S P P   PP PA PP   P     S  P  P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
 Frame = -3

Query: 208 PXRSXPPSXPRXLXLXXXPPSXPXPRXXPPPAXP--PXVXP--RXXAXSVFPXXPLXVPP 41
           P  S PP  P          + P P   PPPA P  P   P       S  P  P  VPP
Sbjct: 145 PRPSIPPPSPASAP-PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 40  XXL 32
             L
Sbjct: 204 PPL 206


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/58 (29%), Positives = 17/58 (29%)
 Frame = -3

Query: 214  PXPXRSXPPSXPRXLXLXXXPPSXPXPRXXPPPAXPPXVXPRXXAXSVFPXXPLXVPP 41
            P P    PP  P         PS   P   PP   PP   P      V P      PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV-PVPTAKAPP 1238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,135
Number of Sequences: 5004
Number of extensions: 8020
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)