Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P24
         (909 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    254   1e-67
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         89   6e-18
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   4e-08
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    30   3.0  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)               29   5.2  
SB_43804| Best HMM Match : Abhydrolase_1 (HMM E-Value=3.5e-06)         29   6.9  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        29   6.9  
SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069)        28   9.1  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  254 bits (621), Expect = 1e-67
 Identities = 112/143 (78%), Positives = 131/143 (91%)
 Frame = +1

Query: 184 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 363
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR Q+RSPVTNIARTSFFHI++
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQIRSPVTNIARTSFFHIRQ 60

Query: 364 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 543
            N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++EE IKNNFVLIYELLDEI D+GY
Sbjct: 61  GNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDEIADYGY 120

Query: 544 PQNSDTGVLKTFITQQGIKSASK 612
           PQ +DT +LKTFITQQG+K+ ++
Sbjct: 121 PQKTDTAILKTFITQQGVKTQTR 143



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 42/45 (93%), Positives = 43/45 (95%)
 Frame = +2

Query: 611 REEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
           REEQAQITSQVTGQIGWRR+GIKYRRNELFLDVLE V LLMSPQG
Sbjct: 143 REEQAQITSQVTGQIGWRRDGIKYRRNELFLDVLESVNLLMSPQG 187


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 88.6 bits (210), Expect = 6e-18
 Identities = 36/75 (48%), Positives = 58/75 (77%)
 Frame = +1

Query: 376 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 555
           +   TK+N N A++F FL +++ V   YF ++ EE+I++NFV+IYEL+DE++DFGYPQ +
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 556 DTGVLKTFITQQGIK 600
           +T +L+ +ITQ+G K
Sbjct: 72  ETKILQEYITQEGHK 86



 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +2

Query: 641 VTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
           +T  + WR + IKYR+NE+FLDV+E V L++S  G
Sbjct: 97  LTNAVSWRGDNIKYRKNEVFLDVIESVNLMVSSSG 131


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = +1

Query: 436 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 591
           + ++ + Y G I+EE IK N  LIYELLDE+LDFGY Q + T  LK ++  Q
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATSTEALKAYVFNQ 69



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 677 KYRRNELFLDVLEYVXLLMSPQG 745
           K  +NE+F+D+LE + +L+SP G
Sbjct: 92  KSHKNEIFVDLLERLTVLISPNG 114


>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 487 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGI 597
           K   V I +LL+E+LD G+P  ++  VLK  I    I
Sbjct: 121 KKGAVYILQLLEEMLDNGFPLATEPNVLKELIRPPSI 157


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 178 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 357
           PT +G +   ++ G  +I+R+ +   G     +    VI   Q+++  VTN   +  FH 
Sbjct: 225 PTHVGQVIHSSYGGSAIIARLKKSVHGSRFEGSVIAEVIEPFQELQDDVTNHPLSVSFHG 284

Query: 358 KRANIWLA 381
           + A + LA
Sbjct: 285 ENATLKLA 292


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 468 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 376
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_22194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 825 TGTXASPEQIRIS*PLFPSHXSQRALXPC---GDINKXTYSSTSRNSSFR 685
           TG    P    IS    PS      + PC   G +N+ TYS+T  NSS +
Sbjct: 187 TGHSTEPLATFISASSVPSTHPSLLVAPCSSTGSVNELTYSTTQMNSSLQ 236


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 468 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 376
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 264 CCGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAG-SSH 389
           CC R+  +   C   G I  YQ   H  LP+    YLAG  SH
Sbjct: 262 CCSRLNVQRYGCYTTGHINDYQQIFHYALPHGT--YLAGVESH 302


>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 95  RQHFSHYIQPKNEPPPNSSR 36
           R HF H    K  PPPNSSR
Sbjct: 212 RCHFIHNADEKRAPPPNSSR 231


>SB_43804| Best HMM Match : Abhydrolase_1 (HMM E-Value=3.5e-06)
          Length = 414

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -1

Query: 597 DALLSDECLQDPSIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHHI 442
           D   S + L++P   +L    + +L+ +L+  N ++++ L  +   IRL+HI
Sbjct: 237 DLFRSADSLEEPVNSLLLNRHLANLLCKLVRDNTIMVEALKEDKPNIRLNHI 288


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 370 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGYP 546
           +++  +T ++ N     E L     V+  Y   + E  I ++ F LI+   DEI+  GY 
Sbjct: 535 LYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAF-DEIVALGYR 593

Query: 547 QNSDTGVLKTF 579
           +N +   ++TF
Sbjct: 594 ENVNLAQIRTF 604


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -1

Query: 597 DALLSDECLQDPSIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHHI 442
           D   S + L++P   +L    + +L+ +L+  N ++++ L  +   IRL+HI
Sbjct: 237 DLFRSADSLEEPVNSLLLNRHLANLLCKLVRDNTIMVEALKEDKPNIRLNHI 288


>SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069)
          Length = 331

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 811 IPGTDKDFMTTFPQPREPESTXTL 740
           + G D  F+ +FP+P +P ST T+
Sbjct: 250 LKGNDSRFLISFPKPHKPISTDTI 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,071,900
Number of Sequences: 59808
Number of extensions: 602469
Number of successful extensions: 1567
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)