Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P24
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   2.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 202 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 324
           V N+ G V    +  Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 671 GIKYRRNELFLDVLEYVXLLMSPQGXSALWLXW 769
           G+K +R E  L+   Y   + +  G   LWL W
Sbjct: 192 GMKEKRKEHHLEGPSYNSDIFAMIGTIFLWLFW 224


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 719 HTLVHQGTARFVCT*CLHGASQSDQLLV 636
           H  +H G     CT C     QS QL++
Sbjct: 166 HMRIHTGERPHKCTVCSKTFIQSGQLVI 193



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 719 HTLVHQGTARFVCT*CLHGASQSDQLLV 636
           H   H G   +VC  C  G + S QL V
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQLKV 221


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 249 IPVDSRDQHLAFMVINEQAPDHCG 178
           + V + DQ+ + ++I   +PDH G
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNG 681


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -1

Query: 393 LCDCCQPNICTLDMEERCACNVGN 322
           LC CC  + C  +M     C   N
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKCYN 769


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,023
Number of Sequences: 438
Number of extensions: 5787
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)