Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_P24
(909 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 142 3e-34
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 142 3e-34
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 105 5e-23
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 105 5e-23
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 105 5e-23
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 104 7e-23
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 73 3e-13
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 40 0.003
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 38 0.012
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 31 1.1
At5g23700.1 68418.m02778 hypothetical protein 30 1.8
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 3.2
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 29 4.3
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ... 29 5.6
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ... 29 5.6
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 28 7.4
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil... 28 9.8
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 28 9.8
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 28 9.8
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 142 bits (344), Expect = 3e-34
Identities = 63/143 (44%), Positives = 96/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 178 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 357
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 358 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 534
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 535 FGYPQNSDTGVLKTFITQQGIKS 603
FGYPQN +LK +ITQ+G++S
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRS 144
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 632 TSQVTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
T QVTG +GWRREG+ Y++NE+FLD++E V LLMS +G
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKG 196
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 142 bits (344), Expect = 3e-34
Identities = 63/143 (44%), Positives = 96/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 178 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 357
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 358 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 534
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 535 FGYPQNSDTGVLKTFITQQGIKS 603
FGYPQN +LK +ITQ+G++S
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRS 144
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 632 TSQVTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
T QVTG +GWRREG+ Y++NE+FLD++E V LLMS +G
Sbjct: 159 TLQVTGAVGWRREGLAYKKNEVFLDIVESVNLLMSSKG 196
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 105 bits (251), Expect = 5e-23
Identities = 48/141 (34%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Frame = +1
Query: 184 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 354
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 355 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 534
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 535 FGYPQNSDTGVLKTFITQQGI 597
FGY Q + T VLK++I + I
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPI 142
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 105 bits (251), Expect = 5e-23
Identities = 48/141 (34%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Frame = +1
Query: 184 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 354
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 355 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 534
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 535 FGYPQNSDTGVLKTFITQQGI 597
FGY Q + T VLK++I + I
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPI 142
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 105 bits (251), Expect = 5e-23
Identities = 48/131 (36%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Frame = +1
Query: 196 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 369
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 370 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 549
++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 VYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 550 NSDTGVLKTFI 582
++ +L FI
Sbjct: 128 YTEARILSEFI 138
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +2
Query: 641 VTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
VT + WR EGI+Y++NE+FLDV+E V +L++ G
Sbjct: 155 VTNAVSWRSEGIQYKKNEVFLDVIENVNILVNSNG 189
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 104 bits (250), Expect = 7e-23
Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Frame = +1
Query: 196 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 369
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 370 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 549
I+L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 IYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 550 NSDTGVLKTFI 582
++ +L FI
Sbjct: 128 FTEARILSEFI 138
Score = 46.4 bits (105), Expect = 3e-05
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +2
Query: 641 VTGQIGWRREGIKYRRNELFLDVLEYVXLLMSPQG 745
VT + WR EG+K+++NE+FLDV+E V +L++ G
Sbjct: 155 VTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNG 189
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Frame = +1
Query: 184 MIGGLFVYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHI 357
M+ +F+ + GEV++ + + R+ F I ++ PV F I
Sbjct: 1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60
Query: 358 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 537
R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE++D
Sbjct: 61 VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDN 120
Query: 538 GYPQNSDTGVLKTFITQQGIKS 603
G+P ++ +LK I + S
Sbjct: 121 GFPLTTEPSILKEMIAPPNLVS 142
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 364 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 543
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 544 PQNSDTGVLKTFITQQ 591
Q S + I+ Q
Sbjct: 123 LQESSKKTVARIISAQ 138
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 364 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 543
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 544 PQNSDTGVLKTFITQQ 591
Q S + I+ Q
Sbjct: 123 LQESSKKTVARIISAQ 138
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 31.1 bits (67), Expect = 1.1
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Frame = -1
Query: 606 GRLDALLSDECLQDPSIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHHIN-DLQ 430
G LD L+SD+CL + + VT+++ L+ ILD+ K+ L DL
Sbjct: 519 GLLDILISDDCLSNE--QYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLG 576
Query: 429 QELKYHGRVHILLCDCCQPNICT-LDMEERCACNVGNR*SHLLASMDHIHSECVHSITTN 253
+EL+ G V + C N+ T LD+ + V + L+ ++ S + TT
Sbjct: 577 RELE--GLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARLVQIFANLISNSIKFTTTG 634
Query: 252 II 247
I
Sbjct: 635 HI 636
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 284 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 156
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 534 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 364
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 363 TLDMEER 343
T ++ +
Sbjct: 904 TYGLQNQ 910
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 735 DINKXTYSSTSRNSSFRLYLMPSRR 661
D N+ YS R SS++L++MPSRR
Sbjct: 6 DRNQGGYSLGVRCSSYKLFIMPSRR 30
>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 487 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKGGTSPDYLTSNWSDWLAP 666
K+ ++ + LD + FG T ++ + +T + + + PD+ TS SD+L+P
Sbjct: 298 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFLSP 357
>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 487 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKGGTSPDYLTSNWSDWLAP 666
K+ ++ + LD + FG T ++ + +T + + + PD+ TS SD+L+P
Sbjct: 298 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFLSP 357
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 538 GYPQNSDTGVLKTFITQQGIKSASKGGTSPDYLTSN-WSDW 657
GY QNS G KT + G +S G + Y SN W DW
Sbjct: 352 GYYQNSGIG-NKTANSSFGGSQSSSSGHNNSYRNSNSWDDW 391
>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
to SP|Q12627 from Kluyveromyces lactis and SP|P32891
from Saccharomyces cerevisiae; contains Pfam FAD linked
oxidases, C-terminal domain PF02913, Pfam FAD binding
domain PF01565
Length = 567
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -1
Query: 714 SSTSRNSSFRLYLMPSRRQPI*PVTCEVIWACSSLGGRLDALLSDECL 571
+S S F P ++ + + E +WAC ++ +A+++D C+
Sbjct: 400 ASKHNGSDFMFAEEPEAKKELWKIRKEALWACYAMAPGHEAMITDVCV 447
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -1
Query: 639 CEVIWACSSLGGRLDALLSDECLQDPSIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAK 460
C CS + G+ S CL +++L + Q K+L ++ + F L K
Sbjct: 357 CGDACVCSGILGK-----SSSCLSSSRVKVLEIWSYQGTSKELKQMGHFLMKLQFLELVK 411
Query: 459 IR 454
IR
Sbjct: 412 IR 413
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +1
Query: 196 LFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN 369
+ + N +G+ +++ Y R A++ V AR + + + A+
Sbjct: 6 ILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRRYAS 65
Query: 370 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 531
++ + N + EF+ +++ M +FG + E +I + + +L+E++
Sbjct: 66 LFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMV 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,303
Number of Sequences: 28952
Number of extensions: 416729
Number of successful extensions: 1054
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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