Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P22
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               324   8e-89
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.71 
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   31   0.94 
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.6  
SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)              30   2.9  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.9  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   5.0  
SB_41635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   8.7  
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  28   8.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  324 bits (795), Expect = 8e-89
 Identities = 147/198 (74%), Positives = 171/198 (86%)
 Frame = +2

Query: 68  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 247
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 248 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 427
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 428 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 607
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 608 EVLRLRGVLPRDQRWDVV 661
           EVLR+RG + R   W+++
Sbjct: 181 EVLRMRGSISRALPWEIM 198


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 364  CGTFHTRCFYQPDPSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 543
            C   H+ C      SCI   S+ DCI  C+ PS     F C+ +C         T++C +
Sbjct: 866  CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918

Query: 544  CYP 552
            C+P
Sbjct: 919  CHP 921


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 660  TTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKAITG 493
            T   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++   G
Sbjct: 1399 TDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNENELG 1456

Query: 492  MLTY 481
             +TY
Sbjct: 1457 TMTY 1460


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 678 GEPNQPTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVLH 508
           G   +PT   ++   STP      + N+  ++P EW ++     H   +   L+GES   
Sbjct: 4   GSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKYE 63

Query: 507 KAITG 493
             +TG
Sbjct: 64  FTLTG 68


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 440 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 535
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 678 GEPNQPTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLV---LHGIAMSTNLSGESVLH 508
           G  ++PT   R+   STP   +    +  +I+P +W D+     +  ++   L+ E +  
Sbjct: 313 GSGSRPTVKYRFGDASTPLYQDLKEKSTRNIRPWQWHDMTSRYQYAQSLINQLADERLYE 372

Query: 507 KAITG 493
             +TG
Sbjct: 373 FTLTG 377


>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
          Length = 472

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 678 GEPNQPTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLV---LHGIAMSTNLSGESVLH 508
           G  ++PT   R+   STP   +    +  +I+P +W D+     +  ++   L+ E +  
Sbjct: 341 GSGSRPTVKYRFGDASTPLYQDLKEKSTRNIRPWQWHDMTSRYQYAQSLINQLADERLYE 400

Query: 507 KAITG 493
             +TG
Sbjct: 401 FTLTG 405


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 572 HSIGLMWWLLAREVLRLRGVLP 637
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 421 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 546
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_41635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 388 FYQPDPSCIP*TSSLDCIGPCTRPSTH 468
           +YQP   CIP TSS   I   T P TH
Sbjct: 64  YYQPLKPCIPFTSSCYPIHLSTHPQTH 90


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 630 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 508
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 416 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 565
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 267 PSRTPLTCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLPTRSKLHSVNL 425
           PSRTPL+  ++ +G  +S+ Y       VLR+ R   H ++  +R  L ++N+
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,915,052
Number of Sequences: 59808
Number of extensions: 638408
Number of successful extensions: 1601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)