Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P22
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    27   0.30 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    27   0.30 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 666 QPTTSQRWSRGSTPRSLNTSRANNHHIKP 580
           Q T +Q WSRG+T  SL+ S  +   + P
Sbjct: 16  QGTQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 666 QPTTSQRWSRGSTPRSLNTSRANNHHIKP 580
           Q T +Q WSRG+T  SL+ S  +   + P
Sbjct: 16  QGTQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 270 SRTPLTCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLP 395
           +R   TC  SH  P V   +  LP+  V R L D  H   LP
Sbjct: 312 TRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLP 353


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 270 SRTPLTCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLP 395
           +R   TC  SH  P V   +  LP+  V R L D  H   LP
Sbjct: 18  TRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLP 59


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 662 PQHPSAGHGEAHHEASTLH 606
           P H + GHG +H  A+  H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 268 GYDGTSSQNKFFPGTTQVDH 209
           G  GTS+ +  FP   +VDH
Sbjct: 472 GVIGTSNLSLVFPNDIKVDH 491


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 437 VLDPAQDHQPITEASYVNIPVIALCNTDSP 526
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,114
Number of Sequences: 438
Number of extensions: 5553
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)