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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P21
         (883 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb...   242   7e-63
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly...   174   2e-42
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ...   171   3e-41
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol...   165   1e-39
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a...   165   1e-39
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi...   162   9e-39
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir...   160   5e-38
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R...   159   9e-38
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir...   158   2e-37
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir...   151   2e-35
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu...   149   9e-35
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym...   148   2e-34
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|...   146   9e-34
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob...   144   3e-33
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei...    72   2e-11
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei...    71   3e-11
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R...    69   2e-10
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei...    69   2e-10
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po...    68   3e-10
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei...    66   1e-09
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root...    64   5e-09
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v...    64   5e-09
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei...    64   6e-09
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|...    63   8e-09
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|...    62   2e-08
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei...    62   2e-08
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl...    61   4e-08
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban...    60   6e-08
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep...    60   6e-08
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep...    60   6e-08
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:...    60   7e-08
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst...    60   7e-08
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re...    60   1e-07
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi...    59   2e-07
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po...    57   5e-07
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee...    57   5e-07
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic...    56   2e-06
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio...    55   2e-06
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep...    55   3e-06
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei...    54   6e-06
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei...    52   2e-05
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep...    52   3e-05
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei...    52   3e-05
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc...    51   3e-05
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic...    51   4e-05
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei...    51   4e-05
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ...    50   8e-05
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica...    48   3e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting...    47   6e-04
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica...    47   6e-04
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ...    47   7e-04
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc...    47   7e-04
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)...    46   0.001
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle...    46   0.002
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X...    43   0.009
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap...    42   0.016
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R...    42   0.027
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl...    38   0.26 
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric...    35   2.4  
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein...    35   2.4  
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re...    35   3.2  
UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14; B...    35   3.2  
UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7; Crin...    34   4.2  
UniRef50_Q4PGK6 Cluster: Putative uncharacterized protein; n=1; ...    34   4.2  
UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14; Cri...    34   5.5  
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep...    34   5.5  
UniRef50_A3I102 Cluster: Putative uncharacterized protein; n=1; ...    34   5.5  
UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    34   5.5  
UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7; Stra...    33   7.3  
UniRef50_Q3JM69 Cluster: YO185-like protein; n=2; Burkholderia p...    33   7.3  
UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella ve...    33   7.3  
UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root...    33   7.3  
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|...    33   9.6  
UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis...    33   9.6  
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ...    33   9.6  

>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
            mori Macula-like latent virus|Rep: RNA-dependent RNA
            polymerase - Bombyx mori Macula-like latent virus
          Length = 1747

 Score =  242 bits (593), Expect = 7e-63
 Identities = 111/111 (100%), Positives = 111/111 (100%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA
Sbjct: 1428 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 1487

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG
Sbjct: 1488 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 1538



 Score =  173 bits (420), Expect = 7e-42
 Identities = 76/85 (89%), Positives = 81/85 (95%)
 Frame = +2

Query: 2    TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181
            + LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI
Sbjct: 1343 SSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 1402

Query: 182  FSKTQHKINEGSIFGPWESMPDISL 256
            FSKTQHKINEGSIFGPW++   ++L
Sbjct: 1403 FSKTQHKINEGSIFGPWKACQTLAL 1427



 Score = 82.6 bits (195), Expect = 1e-14
 Identities = 44/76 (57%), Positives = 46/76 (60%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSPRLGRRFSTPFSHI 763
            L GEPGTYDDNTDYNIAVIYSEYDITTQTV VSGDDSL        P             
Sbjct: 1536 LTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTF 1595

Query: 764  QKXVVKNGLXWXLXLG 811
            +K  V+NGL     LG
Sbjct: 1596 KKEFVRNGLFCGYYLG 1611


>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
            Polyprotein - Grapevine rupestris vein feathering virus
          Length = 2068

 Score =  174 bits (424), Expect = 2e-42
 Identities = 75/111 (67%), Positives = 96/111 (86%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHDA+VL+ GP+KKYQR+FD+ DRP N+FVY G TP +++ +  ++LKP +  V NDY++
Sbjct: 1531 MHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKPGE-RVANDYTS 1589

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVV ERKKMERL+IPSHLIDLH ++KTN+++QFGPLTCMRLTG
Sbjct: 1590 FDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTG 1640



 Score =  114 bits (274), Expect = 3e-24
 Identities = 49/82 (59%), Positives = 65/82 (79%)
 Frame = +2

Query: 11   CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190
            C A  R P+  VPF  +LF ECI LNE++QLS+KTQA+I AN +RSDPDWR++AVRIF+K
Sbjct: 1449 CTAMLRSPSASVPFDENLFAECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAK 1508

Query: 191  TQHKINEGSIFGPWESMPDISL 256
            TQHK+N+ SIFG W++   ++L
Sbjct: 1509 TQHKVNDHSIFGGWKACQTLAL 1530



 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDNTDYN+AV++ EY + +   +VSGDDSL
Sbjct: 1638 LTGEPGTYDDNTDYNLAVLHLEYLVGSTPCMVSGDDSL 1675


>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
            blue dwarf virus|Rep: Replicase-associated polyprotein -
            Oat blue dwarf virus
          Length = 2066

 Score =  171 bits (415), Expect = 3e-41
 Identities = 74/111 (66%), Positives = 94/111 (84%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHDA+VL+ GP+KKYQRVFD++DRP +L+++ GQTP  +S +  +HL P  + + NDY+A
Sbjct: 1499 MHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPA-VKLANDYTA 1557

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLERKKMERLSIP HLI LH ++KT++ +QFGPLTCMRLTG
Sbjct: 1558 FDQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTG 1608



 Score =  125 bits (301), Expect = 2e-27
 Identities = 55/83 (66%), Positives = 67/83 (80%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            LCRAY R P    PF   LFVECI+LNE++QL++KTQAVI  NA RSDPDWR++AVRIFS
Sbjct: 1416 LCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFS 1475

Query: 188  KTQHKINEGSIFGPWESMPDISL 256
            KTQHK+NEGSIFG W++   ++L
Sbjct: 1476 KTQHKVNEGSIFGAWKACQTLAL 1498



 Score = 56.8 bits (131), Expect = 7e-07
 Identities = 26/38 (68%), Positives = 28/38 (73%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDNTDYN+AVI  EY       +VSGDDSL
Sbjct: 1606 LTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVSGDDSL 1643


>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
            Polyprotein - Maize rayado fino virus
          Length = 2027

 Score =  165 bits (401), Expect = 1e-39
 Identities = 70/111 (63%), Positives = 91/111 (81%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHDA+VL+ GP+KKYQR FD +DRP  L+V+ G TP++++ +  +HL P  + + NDY+A
Sbjct: 1458 MHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPA-VKLANDYTA 1516

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVV ER KM RLSIP+ L+DLH Y+KTN+++QFGPLTCMRLTG
Sbjct: 1517 FDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTG 1567



 Score =  131 bits (316), Expect = 3e-29
 Identities = 55/82 (67%), Positives = 68/82 (82%)
 Frame = +2

Query: 11   CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190
            CRAY R P    PF PDL+ ECINLNE++QLS+KTQA I ANANRSDPDWR++AVRIF+K
Sbjct: 1376 CRAYHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAK 1435

Query: 191  TQHKINEGSIFGPWESMPDISL 256
            TQHK+NEGS+FG W++   ++L
Sbjct: 1436 TQHKVNEGSLFGSWKACQTLAL 1457



 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 26/38 (68%), Positives = 32/38 (84%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDNTDYNIAV++ EY + +  ++VSGDDSL
Sbjct: 1565 LTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSL 1602


>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
            death-associated virus|Rep: Polyprotein - Citrus sudden
            death-associated virus
          Length = 2189

 Score =  165 bits (401), Expect = 1e-39
 Identities = 73/111 (65%), Positives = 91/111 (81%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHDA+VLI GP+KKYQRVFD +DRP +L+++ G TP  +S +   HL    + + NDY+A
Sbjct: 1637 MHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTA-VKLANDYTA 1695

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLERKKMERLSIP  LIDLH ++KT++++QFGPLTCMRLTG
Sbjct: 1696 FDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTG 1746



 Score =  130 bits (314), Expect = 5e-29
 Identities = 57/84 (67%), Positives = 67/84 (79%)
 Frame = +2

Query: 5    GLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIF 184
            GLCRAY R P H   F P LF ECINLNE++QLS+KTQA I  NA RSDPDWR++AVRIF
Sbjct: 1553 GLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIF 1612

Query: 185  SKTQHKINEGSIFGPWESMPDISL 256
            SKTQHK+NEGSIFG W++   ++L
Sbjct: 1613 SKTQHKVNEGSIFGSWKACQTLAL 1636



 Score = 56.4 bits (130), Expect = 9e-07
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDN+DYN+AVI  EY       +VSGDDSL
Sbjct: 1744 LTGEPGTYDDNSDYNLAVINCEYMAANTPTMVSGDDSL 1781


>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
            Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
            mosaic virus
          Length = 1776

 Score =  162 bits (394), Expect = 9e-39
 Identities = 95/238 (39%), Positives = 131/238 (55%), Gaps = 6/238 (2%)
 Frame = +2

Query: 2    TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181
            T  C+A+ R PN  +PF P LF ECI LNEY+QLS+KTQA I +NA+RSDPDWRYT VRI
Sbjct: 1363 TNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRI 1422

Query: 182  FSKTQHKINEGSIFGPWESMPDISLE---CMMPLS*FLARSRNISEFSTVKIVLPTCLCM 352
            F+K+QHK+N+GSIFG W++   ++L     ++ L       R I  +     +   C   
Sbjct: 1423 FAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKT 1482

Query: 353  EAKLHTISLGLLRP---I*NHYKFMSAMTTLRLTNLSMVRPLSWNGRKWSGFPFHLIL*T 523
             ++L   S   L+    I N Y                ++ +   G        H+ L T
Sbjct: 1483 PSELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFESLK-MHRVGIPRHLIDLHIYLKT 1541

Query: 524  SIATSKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            +++T    L           L GEPGTYDDNTDYN+AVI+S+Y I+   ++VSGDDS+
Sbjct: 1542 NVSTQFGPL-------TCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIMVSGDDSV 1592



 Score =  151 bits (366), Expect = 2e-35
 Identities = 65/111 (58%), Positives = 86/111 (77%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L  GP+KKYQR+ D  DRP  ++ + G+TP +LS ++ S LK    ++CNDY++
Sbjct: 1448 MHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKG-DAYICNDYTS 1506

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAV+ E  KM R+ IP HLIDLH Y+KTN+++QFGPLTCMRLTG
Sbjct: 1507 FDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTG 1557


>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
            Tymovirus|Rep: RNA replicase polyprotein - Kennedya
            yellow mosaic virus (strain Jervis bay) (KYMV)
          Length = 1874

 Score =  160 bits (388), Expect = 5e-38
 Identities = 70/111 (63%), Positives = 91/111 (81%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L  GP+KKYQR+FD+ DRPP+L+ + G++P DLS +  +HL   QI + NDY+A
Sbjct: 1552 MHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHLTG-QIKLTNDYTA 1610

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGE+V+LE  KM+RLSIPSHLI LH ++KTN+ +QFGPLTCMRLTG
Sbjct: 1611 FDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMRLTG 1661



 Score =  121 bits (292), Expect = 2e-26
 Identities = 50/83 (60%), Positives = 68/83 (81%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            LC+AY+R+P H  PF P LF ECI LN+Y+QLS+KTQA + AN +RSDPDWR+TAV+IF+
Sbjct: 1469 LCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFA 1528

Query: 188  KTQHKINEGSIFGPWESMPDISL 256
            K+QHK+N+ SIFG W++   ++L
Sbjct: 1529 KSQHKVNDASIFGNWKACQTLAL 1551



 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDN+DYN+AVI+S++D+    V+VSGDDSL
Sbjct: 1659 LTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSL 1696


>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
            Replicase - Grapevine fleck virus
          Length = 1949

 Score =  159 bits (386), Expect = 9e-38
 Identities = 68/111 (61%), Positives = 87/111 (78%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L+ GP+KKYQR+ DS+DRP +L+++ GQTP+ LS +  +HL P  +H+ NDY+A
Sbjct: 1633 MHDYLILVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP-SVHLANDYTA 1691

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLE  KM R SIP   I LH ++KTNI  QFGPLTCMR+TG
Sbjct: 1692 FDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITG 1742



 Score =  106 bits (254), Expect = 9e-22
 Identities = 50/83 (60%), Positives = 62/83 (74%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            L RAY R P   VPF P LF  CI  N+++QL++KTQA IQANA RSDPDWR+T VRIFS
Sbjct: 1551 LQRAYCRSPE-PVPFDPVLFASCIAENDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFS 1609

Query: 188  KTQHKINEGSIFGPWESMPDISL 256
            KTQHK+NE S+F  W++   ++L
Sbjct: 1610 KTQHKVNENSLFTSWKACQTLAL 1632



 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 25/38 (65%), Positives = 32/38 (84%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            + GEPGTYDDNTDYN+A++Y++Y +    VLVSGDDSL
Sbjct: 1740 ITGEPGTYDDNTDYNLAILYTQYLLHRTPVLVSGDDSL 1777


>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
            Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
            mosaic virus
          Length = 1844

 Score =  158 bits (384), Expect = 2e-37
 Identities = 67/111 (60%), Positives = 88/111 (79%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L+ GP+KKYQR+FD+ DRPPN++ + G+TP  L  +   HL      + NDY+A
Sbjct: 1522 MHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTA 1581

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGE+VVLE  KM+RL+IPSHLI LH ++KTN+++QFGPLTCMRLTG
Sbjct: 1582 FDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTG 1632



 Score =  130 bits (314), Expect = 5e-29
 Identities = 54/83 (65%), Positives = 69/83 (83%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            LCRAY R PN  VPF P+LF ECI+LNEY+QLS+KTQ+ I ANA+RSDPDWR+T V+IF+
Sbjct: 1439 LCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFA 1498

Query: 188  KTQHKINEGSIFGPWESMPDISL 256
            K QHK+N+GSIFG W++   ++L
Sbjct: 1499 KAQHKVNDGSIFGSWKACQTLAL 1521



 Score = 67.7 bits (158), Expect = 4e-10
 Identities = 28/38 (73%), Positives = 34/38 (89%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDNTDYN+AVIYS+YD+ +  ++VSGDDSL
Sbjct: 1630 LTGEPGTYDDNTDYNLAVIYSQYDVGSCPIMVSGDDSL 1667


>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
            Tymovirus|Rep: RNA replicase polyprotein - Eggplant
            mosaic virus
          Length = 1839

 Score =  151 bits (366), Expect = 2e-35
 Identities = 67/111 (60%), Positives = 87/111 (78%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MH  I+L+ GP+KKYQR+FDSKDRPP+++ + G+TP  LS++  +HL     ++ NDY+A
Sbjct: 1518 MHGYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHLSGSS-YIANDYTA 1576

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLE  KM RLSIP  LI LH ++K ++ +QFGPLTCMRLTG
Sbjct: 1577 FDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFGPLTCMRLTG 1627



 Score =  118 bits (284), Expect = 2e-25
 Identities = 51/85 (60%), Positives = 66/85 (77%)
 Frame = +2

Query: 2    TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181
            + LC AY R+PN  +PFQP+LF ECI +N+Y+QLS+KTQA I AN  RSDPDWR TAVRI
Sbjct: 1433 SSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQATIVANHQRSDPDWRLTAVRI 1492

Query: 182  FSKTQHKINEGSIFGPWESMPDISL 256
            F+K QHK+N+ SIF  W++   ++L
Sbjct: 1493 FAKAQHKVNDASIFSGWKACQTLAL 1517



 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSP 724
            L GEPGTYDDN+DYN+AVIYS+Y +    +L+SGDDS+   +   SP
Sbjct: 1625 LTGEPGTYDDNSDYNLAVIYSQYSLNGHPILISGDDSVLCGTPPPSP 1671


>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
            latent virus|Rep: RNA replicase polyprotein - Erysimum
            latent virus (ELV)
          Length = 1748

 Score =  149 bits (361), Expect = 9e-35
 Identities = 66/111 (59%), Positives = 84/111 (75%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L  GP+KKYQR+FD  +RP +++ + G TP+DL R+ S HL+       NDY+A
Sbjct: 1425 MHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPHDLRRWCSKHLETSHC-TTNDYTA 1483

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVV E  KM RLSIP +LI LH ++KTN+ +QFGPLTCMRLTG
Sbjct: 1484 FDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTG 1534



 Score =  121 bits (291), Expect = 3e-26
 Identities = 49/82 (59%), Positives = 69/82 (84%)
 Frame = +2

Query: 11   CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190
            C+ Y+R PN ++PF   LF+ECI +N+Y+QLS+KTQA I ANA+RSDPDWR+T V+IF+K
Sbjct: 1343 CQVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAK 1402

Query: 191  TQHKINEGSIFGPWESMPDISL 256
            +QHK+N+GSIFGPW++   ++L
Sbjct: 1403 SQHKVNDGSIFGPWKACQTLAL 1424



 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 31/61 (50%), Positives = 38/61 (62%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSPRLGRRFSTPFSHI 763
            L GEPGTYDDNTDYN+AV+  +YD+     LVSGDDS    S + SPR    F     H+
Sbjct: 1532 LTGEPGTYDDNTDYNLAVLNLQYDLRKTPTLVSGDDS--YLSGTLSPRSNWPFVKELLHL 1589

Query: 764  Q 766
            +
Sbjct: 1590 R 1590


>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
            Tymoviridae|Rep: Replicase-associated protein -
            Poinsettia mosaic virus
          Length = 1987

 Score =  148 bits (359), Expect = 2e-34
 Identities = 66/111 (59%), Positives = 84/111 (75%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD +VL  GP+K YQR+FDS++RP N++ + G +P ++S +A  HL+    H  NDY+A
Sbjct: 1455 MHDYVVLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHT-NDYTA 1513

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVV E  KM RLSIP  LI+LH Y+K N+ +QFGPLTCMRLTG
Sbjct: 1514 FDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTG 1564



 Score =  123 bits (296), Expect = 7e-27
 Identities = 54/82 (65%), Positives = 65/82 (79%)
 Frame = +2

Query: 11   CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190
            CRAY RHP   VPF   LF ECIN+NE++Q SNKT++ I ANA+RSDPDWR TAV+IFSK
Sbjct: 1373 CRAYNRHPQAVVPFDELLFAECININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSK 1432

Query: 191  TQHKINEGSIFGPWESMPDISL 256
            TQHKINE SIFG W++   ++L
Sbjct: 1433 TQHKINEASIFGSWKACQTLAL 1454



 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 26/38 (68%), Positives = 32/38 (84%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697
            L GEPGTYDDNTDYN+AVIYS+Y +    ++VSGDDS+
Sbjct: 1562 LTGEPGTYDDNTDYNLAVIYSKYLVLDHPIMVSGDDSV 1599


>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
            Replicase - Dulcamara mottle virus
          Length = 1742

 Score =  146 bits (353), Expect = 9e-34
 Identities = 65/111 (58%), Positives = 87/111 (78%)
 Frame = +1

Query: 259  MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438
            MHD ++L  GP+KKYQR FD KD P +++ + G+TP DLS +  ++L   Q+++ NDY++
Sbjct: 1421 MHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSIWCKTNLSH-QVYIENDYTS 1479

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            FDQSQHGEAVVLE  KM+RL IP  LI+LH ++KTN+ +QFGPLTCMRLTG
Sbjct: 1480 FDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQFGPLTCMRLTG 1530



 Score =  124 bits (298), Expect = 4e-27
 Identities = 50/83 (60%), Positives = 67/83 (80%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            LC  Y RHP+  +PF P LF ECI +N+Y+QLS+KT+A I ANA RSDPDWRYT+V+IF+
Sbjct: 1338 LCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFA 1397

Query: 188  KTQHKINEGSIFGPWESMPDISL 256
            K+QHK+N+GSIFG W++   ++L
Sbjct: 1398 KSQHKVNDGSIFGNWKACQTLAL 1420



 Score = 63.7 bits (148), Expect = 6e-09
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSP 724
            L GEPGTYDDNTDYN+AVIYS+Y + +   LVSGDDS+       +P
Sbjct: 1528 LTGEPGTYDDNTDYNLAVIYSQYSMGSTPCLVSGDDSVVAGQPPVNP 1574


>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
           virus|Rep: Replicase RdRp - Grapevine Red Globe virus
          Length = 424

 Score =  144 bits (349), Expect = 3e-33
 Identities = 64/110 (58%), Positives = 85/110 (77%)
 Frame = +1

Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
           HDA++L+ GP+KKYQR FD+K RP  ++ +   TP++LS +  +H+K  Q H+ NDY+A+
Sbjct: 23  HDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFELSTWCQAHMKT-QHHLTNDYTAY 81

Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
           DQSQ GEAVVLER KM R+SIP  LIDLH ++KTN+ +Q GPLT MRLTG
Sbjct: 82  DQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLKTNVDTQLGPLTSMRLTG 131



 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = +2

Query: 584 LPGEPGTYDDNTDYNIAVIYSEY--DITTQTVLVSGDD 691
           L GEPGTYDDN+DYN+AV  +++  D     VL+SGDD
Sbjct: 129 LTGEPGTYDDNSDYNLAVTAAKFILDPEVHAVLISGDD 166


>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
            X|Rep: RNA replication protein (165 kDa protein) (ORF 1
            protein) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
          Length = 1456

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 39/106 (36%), Positives = 58/106 (54%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V++FG + +Y R F    +P  +F+    TP D+S +A ++    +  + NDY+AFDQSQ
Sbjct: 1191 VMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQ 1250

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +   IP  +I  +  IKTN     G L+ MRLTG
Sbjct: 1251 DGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTG 1296



 Score = 35.9 bits (79), Expect = 1.4
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLV-SGDDSLXITSTSCSPRLGRRF 742
            L GE  T+D NT+ NIA  ++++DI   T  V +GDDS    +  C P +   F
Sbjct: 1294 LTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDS----ALDCVPEVKHSF 1343


>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
            Potexvirus|Rep: RNA replication protein (176 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
            potexvirus (PMV)
          Length = 1547

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS---HLKPLQIHVCNDY 432
            H A V++FG + +Y R      +P ++ +    TP DLS +A+    H K     + ND+
Sbjct: 1272 HQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDF 1331

Query: 433  SAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            +AFDQSQ G  +  E  K    SIP  ++D +  IKTN     G L  MRLTG
Sbjct: 1332 TAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTG 1384



 Score = 36.3 bits (80), Expect = 1.0
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 14/243 (5%)
 Frame = +2

Query: 8    LCRAYKR--H-PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVR 178
            L  +YKR  H P   +PF+ DL+   ++  + + LS K + +I+    R  PD+    + 
Sbjct: 1185 LFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLS-KPENMIKNGMARQSPDYDPNVIS 1243

Query: 179  IFSKTQ--HKINE-GSI-FGPWESMPDISLECMM---PLS*FLARSRNISEFSTVKIVLP 337
            +F K+Q   K+ + G+I   P +++       +M    ++ ++ R R + + + ++I   
Sbjct: 1244 LFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRI--- 1300

Query: 338  TCLCMEAKLHTISLGLLRPI*NHYKFMSAMTTLRLTNLSMVRP---LSWNGRKWSGFPFH 508
             C      L + + G       H+KF         T     +    L +   K       
Sbjct: 1301 NCEMTPEDLSSWAAGEG----GHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIP 1356

Query: 509  LIL*TSIATSKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTV-LVSG 685
              +  +  T K   ++ L       L GE  T+D NT+ NIA  +++++I   T  L +G
Sbjct: 1357 EDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAG 1416

Query: 686  DDS 694
            DDS
Sbjct: 1417 DDS 1419


>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
            Replicase - Botrytis virus F
          Length = 1896

 Score = 68.9 bits (161), Expect = 2e-10
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDR---PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
            ++L +GP   Y R  D + R   PP+++++  +T  D  +F ++H    +     DY+A+
Sbjct: 1622 VLLAWGP---YARYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTAY 1678

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            D SQ    V  E   M RL  P  +I+ +  +K +ITS FGPL  MR +G
Sbjct: 1679 DASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRFSG 1728



 Score = 39.1 bits (87), Expect = 0.15
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 50   FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            F   L  EC   N+   L++K  A +  NA RSDP W    +++F K Q
Sbjct: 1549 FNDSLLEECRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQ 1597


>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
            Potexvirus|Rep: RNA replication protein (186 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
            virus (NMV)
          Length = 1643

 Score = 68.9 bits (161), Expect = 2e-10
 Identities = 37/106 (34%), Positives = 58/106 (54%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R    + +P N+F+    TP DL +F  S     +    ND++AFDQSQ
Sbjct: 1327 VMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQ 1386

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +  +IP+ +I+ + YIK N     G L  MRL+G
Sbjct: 1387 DGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRLSG 1432


>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
            Potexvirus|Rep: Replication-associated protein - Opuntia
            virus X
          Length = 1555

 Score = 68.1 bits (159), Expect = 3e-10
 Identities = 36/106 (33%), Positives = 56/106 (52%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R      +P N+F+   +TP D+ R+A  H    ++   NDY+AFDQSQ
Sbjct: 1294 VMLYGTMARYMRRVREVFQPANIFINCERTPEDMDRWAREHWNFNRLSYANDYTAFDQSQ 1353

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K     IP   I+ +  +K +  +  G L  MRLTG
Sbjct: 1354 DGAMLQFEVLKARHHCIPEEFIEGYIDLKCSSKTFLGILKIMRLTG 1399


>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
            Potexvirus|Rep: RNA replication protein (150 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
            yellow edge-associated virus (SMYEaV)
          Length = 1323

 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 37/108 (34%), Positives = 60/108 (55%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A V+++G + +Y R      +P N+F+   +TP DL  +A ++     +   ND++AFDQ
Sbjct: 1057 APVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFDQ 1116

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            SQ G  +  E  K +  +IPS +I+ +  +KTN     G L  MRL+G
Sbjct: 1117 SQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSG 1164



 Score = 45.6 bits (103), Expect = 0.002
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 10/231 (4%)
 Frame = +2

Query: 32   PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKI 205
            P + +PF  DL+  C N  + + LS    +++   A R DPD+    +++F K+Q   K+
Sbjct: 980  PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFPINEIKLFLKSQWVKKV 1038

Query: 206  NE-GSIFGPWESMPDISLECMM---PLS*FLARSRNISEFSTVKI---VLPTCLCMEAKL 364
             + G +  P +++   +   +M    ++ ++ R R + + S + I     P  L   AK 
Sbjct: 1039 EKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKA 1098

Query: 365  HTISLGLLRPI*NHYKFMSAMTTLRLTNLSMVRPLSWNGRKWSGFPFHLIL*TSIATSKP 544
            +    GL     N +          +    +++       K+   P  +I   S    K 
Sbjct: 1099 NWNFEGLAHS--NDFTAFDQSQDGAMLQFEVIK------AKFHNIPSDII--NSYVELKT 1148

Query: 545  TLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLV-SGDDS 694
              +V L +     L GE  T+D NT+ +IA  +++Y +      V +GDDS
Sbjct: 1149 NAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDS 1199


>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
            RNA-dependent RNA polymerase - Tulip virus X
          Length = 1361

 Score = 64.1 bits (149), Expect = 5e-09
 Identities = 36/108 (33%), Positives = 57/108 (52%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A V+++G + +Y R +     P N+ +   +TP DLSR+  +H    +    ND++AFDQ
Sbjct: 1093 AAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQ 1152

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            SQ G  +  E  K +  ++P  +I+ +  IK       G L  MRLTG
Sbjct: 1153 SQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTG 1200


>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
            virus|Rep: RNA replicase - Cymbidium mosaic virus
          Length = 1417

 Score = 64.1 bits (149), Expect = 5e-09
 Identities = 33/106 (31%), Positives = 56/106 (52%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R    + +P ++F+   +TP D ++F   H    Q+   ND++AFDQSQ
Sbjct: 1120 VMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSYKQVAHTNDFTAFDQSQ 1179

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
                +  E  K    +IP  +I+ +  IK       G L+ MRL+G
Sbjct: 1180 DAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG 1225


>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
            Potexvirus|Rep: RNA replication protein (156 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
            mosaic potexvirus (P1AMV)
          Length = 1385

 Score = 63.7 bits (148), Expect = 6e-09
 Identities = 35/106 (33%), Positives = 58/106 (54%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R F     P N+ +   +TP DLSR+  ++    +    ND++AFDQSQ
Sbjct: 1119 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 1178

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +  ++P  +I+ +  IK +     G L+ MRLTG
Sbjct: 1179 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 1224


>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
            Replicase protein - Nerine virus X
          Length = 1504

 Score = 63.3 bits (147), Expect = 8e-09
 Identities = 31/106 (29%), Positives = 56/106 (52%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R    + +P  +F+   + P D+++F        +    ND++AFDQSQ
Sbjct: 1246 VMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIKQGWNFKRQAYSNDFTAFDQSQ 1305

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +   +P+ +I+ + +IK N     G L  MRL+G
Sbjct: 1306 DGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSG 1351


>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
            ORF 1 - Chenopodium mosaic virus X
          Length = 1571

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 34/98 (34%), Positives = 54/98 (55%)
 Frame = +1

Query: 298  KYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 477
            +Y R   ++ +P N+F+    TP DL++F  +     +    ND++AFDQSQ G  +  E
Sbjct: 1295 RYIRKMRARFQPDNIFINCEATPEDLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFE 1354

Query: 478  RKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
              K +  +IP+ +I+ + YIK N     G L  MRL+G
Sbjct: 1355 VMKAKFFNIPADIIEGYIYIKLNAVIFLGTLGIMRLSG 1392


>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
            Potexvirus|Rep: RNA replication protein (147 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
            mosaic virus (strain O) (WCMV)
          Length = 1294

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 36/106 (33%), Positives = 56/106 (52%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+I+G + +Y R F ++  P  +FV    TP D + F        +    ND++AFDQSQ
Sbjct: 1026 VMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQ 1085

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +  +IP  +I+ +  IKT+     G L+ MRL+G
Sbjct: 1086 DGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSG 1131



 Score = 37.5 bits (83), Expect = 0.45
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 32   PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            P   +PF PDL+  C    E + L     A++ A A R  PD+   A+ +F K+Q
Sbjct: 946  PQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFDSHAIALFLKSQ 999


>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
            - Hosta virus X
          Length = 1507

 Score = 60.9 bits (141), Expect = 4e-08
 Identities = 35/110 (31%), Positives = 54/110 (49%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
            H   V+++G + +Y R    +  P ++ +   +TP  +S F  +          ND++AF
Sbjct: 1224 HQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAF 1283

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            DQSQ G  +  E  K +  +IP  +I  +  IKTN     G L  MRLTG
Sbjct: 1284 DQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTG 1333


>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
            mild mosaic virus|Rep: RNA-dependant RNA polymerase -
            Banana mild mosaic virus
          Length = 1771

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462
            F P  +Y     +++ P N +++ G+   DL+ +   +    +  + +DY AFD SQ  +
Sbjct: 1502 FAPYVRYMEKIVNENLPKNFYIHNGKNFDDLNDYVKKNNFSGRC-IESDYEAFDASQDSQ 1560

Query: 463  AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
             +  E   M R+++P   ID + ++K N+ S+ G +  MR TG A
Sbjct: 1561 ILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEA 1605


>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
            Replicase - Poplar mosaic virus
          Length = 1992

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 33/110 (30%), Positives = 59/110 (53%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A++  F P  +Y  +  ++  PPN +++ G++  +L  +   + K   +   +DY AFD 
Sbjct: 1728 AVLCRFAPYMRYIEMKLNEVLPPNFYIHSGKSLEELDAWVKRY-KFSGVCTESDYEAFDA 1786

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E   M+ L +P+ LI+ + YIKT++ S+ G    MR +G A
Sbjct: 1787 SQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEA 1836


>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
            mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
            mosaic virus
          Length = 1439

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 33/106 (31%), Positives = 57/106 (53%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V+++G + +Y R    + +P ++F+    T  DL++F        +    ND++AFDQSQ
Sbjct: 1170 VMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAFDQSQ 1229

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K +  +IP+ +I+ +  IK N     G L+ MRL+G
Sbjct: 1230 DGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSG 1275


>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
            polymerase - Apple stem pitting virus
          Length = 2185

 Score = 60.1 bits (139), Expect = 7e-08
 Identities = 35/110 (31%), Positives = 58/110 (52%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A++  F P  +Y      +  P NL+++ G+   DL+ + ++H K   +   +DY AFD 
Sbjct: 1917 AVLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDDLAEWVTAH-KFNGVCTESDYEAFDA 1975

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E + M+ L +P  LI  + +IKT++ S+ G    MR TG A
Sbjct: 1976 SQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEA 2025


>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
            mushroom spherical virus|Rep: RNA-dependent RNA
            polymerase - Oyster mushroom spherical virus
          Length = 1581

 Score = 60.1 bits (139), Expect = 7e-08
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH-VCNDYSAFDQSQHG 459
            FGP  +Y      +  P ++  YGG    DL ++A  H+   +     NDY+A+D+S  G
Sbjct: 1280 FGPYIRYLACKLREHSPDHVMHYGGMDLNDLGQWAREHVPSKRTKSFTNDYTAYDKSCRG 1339

Query: 460  EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGR 594
            E +  E   M   +IP  +I+LH  +   +TS  G L  MR +G+
Sbjct: 1340 ETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKLGIMRTSGQ 1384


>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
            ORF1=155k - Bamboo mosaic virus
          Length = 1365

 Score = 59.7 bits (138), Expect = 1e-07
 Identities = 34/110 (30%), Positives = 54/110 (49%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
            + + V+IFG + +Y R    K  P N+ +         S++  +H K  ++   ND+ A+
Sbjct: 1087 YQSTVMIFGTMARYMRRVREKFCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAY 1146

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            DQSQ G  +  E  K     +P+ LI+ +  +K N     G L  MRLTG
Sbjct: 1147 DQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTG 1196


>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
            virus|Rep: Replicase - Coleus vein necrosis virus
          Length = 1977

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 38/110 (34%), Positives = 55/110 (50%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A++  F P  +Y  +   +  P N +V+ G+   +LS +     K   I   +DY AFD 
Sbjct: 1709 AVLCRFAPYMRYIEMKLQEVLPSNFYVHSGKGLDELSEWVKKG-KFEGICTESDYEAFDA 1767

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E K ME L IP  LI  + YIKT++ S+ G    MR +G A
Sbjct: 1768 SQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEA 1817


>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
           Potexvirus|Rep: Replication-associated protein -
           Schlumbergera virus X
          Length = 377

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 35/106 (33%), Positives = 53/106 (50%)
 Frame = +1

Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
           V+++G + +Y R      +P ++ +    TP  LS++A  +    +    NDY+AFDQSQ
Sbjct: 116 VMLYGTMARYMRRVREVFQPKDIMINCETTPEALSQWALENWNFNRTSYANDYTAFDQSQ 175

Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            G  +  E  K    SIP   ID +  +K    +  G L  MRLTG
Sbjct: 176 DGAMLQFEILKARHHSIPDVYIDGYVELKCCSKTFLGVLKIMRLTG 221


>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
            potato chlorotic fleck virus|Rep: RNA dependent RNA
            polymerase - Sweet potato chlorotic fleck virus
          Length = 2090

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 32/112 (28%), Positives = 59/112 (52%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
            H  ++  F P  +Y  +  ++  P N +++ G++  +L+ +   +    ++   +DY AF
Sbjct: 1823 HHIVLARFAPFIRYIEMKVNEALPKNYYIHSGKSLDELNNWVIGN-DFTRVCTESDYEAF 1881

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            D SQ    +  E   ME L +P  LI+ + YIKT++ S+ G  + MR +G A
Sbjct: 1882 DASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEA 1933


>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
            Garlic virus C
          Length = 1550

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 52/106 (49%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            VL+   +  Y R      +P N+F+   +TP   + F  +     + +  +DY+ +DQSQ
Sbjct: 1211 VLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQ 1270

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
                +  E +K     +P  ++D + +IKT+  +  G L  MRL+G
Sbjct: 1271 DAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSG 1316



 Score = 34.3 bits (75), Expect = 4.2
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 584  LPGEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITSTSCSPRLGRRFSTP-FS 757
            L GE  T+D NT+ NIA     + + +T     +GDD   +   +C  R G ++S P FS
Sbjct: 1314 LSGEGPTFDANTECNIAYDALRFQLDSTVKACYAGDD--LVRDKACDERPGWKYSEPLFS 1371

Query: 758  HIQKXVVKN 784
               K +V N
Sbjct: 1372 LKAKPLVTN 1380



 Score = 33.5 bits (73), Expect = 7.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 32   PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            P     F   L+  C  L   + LS  T A +Q  A R DPD+   A+ +F+K+Q
Sbjct: 1132 PKETQAFDKRLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPENAIALFNKSQ 1185


>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
            debilitation-associated RNA virus|Rep: Polyprotein -
            Sclerotinia sclerotiorum debilitation-associated RNA
            virus
          Length = 1700

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +1

Query: 274  VLIFGPIKKY-QRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            V+  G + +Y +R+FD     PN++++  +T  D S +  +          ND  AFD S
Sbjct: 1323 VMATGTLSRYMRRMFDKLCTNPNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDAS 1382

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTG 591
            Q G  V  ER   E L +P  LID   Y+ T I S    G ++ MRL+G
Sbjct: 1383 QDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSG 1429


>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
            Replicase - Garlic virus A
          Length = 1625

 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 29/107 (27%), Positives = 54/107 (50%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            +VL+   +  Y R    + +P N+F+   +TP   + F  +     + +  +DY+ +DQS
Sbjct: 1285 VVLLTTTMALYLRKKREQHQPDNVFIMCERTPDQFNNFVLTKWDFSRPNYTSDYTQYDQS 1344

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            Q    +  E +K   L +P  ++  + +IKT+  +  G L  MRL+G
Sbjct: 1345 QDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVGNLAIMRLSG 1391


>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
            Carlavirus|Rep: RNA replication protein (147 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
            (strain Russian) (PVM)
          Length = 1968

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 33/110 (30%), Positives = 57/110 (51%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A++  F P  +Y  +   +  P N +++ G+   +L  +     K  +I   +DY AFD 
Sbjct: 1703 AVLCRFAPYMRYIEMKVHEVLPKNYYIHSGKGLEELDAWVKKG-KFDRICTESDYEAFDA 1761

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E + M+ L +PS LI+ + +IKT++ S+ G    MR +G A
Sbjct: 1762 SQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEA 1811


>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
            Potexvirus|Rep: RNA replication protein (152 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
            virus
          Length = 1335

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 29/106 (27%), Positives = 50/106 (47%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453
            V++FG + +Y R      +P  + +   +    +S++  S+         ND++A+DQSQ
Sbjct: 1057 VMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNHRLPAYTNDFTAYDQSQ 1116

Query: 454  HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
             G  +  E  K     IP  +++ +  +K N     G L  MRLTG
Sbjct: 1117 DGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTG 1162


>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
            Replicase - Daphne virus S
          Length = 2004

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 32/105 (30%), Positives = 52/105 (49%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462
            F P  +Y  +  ++  P   +++ G+   +L+ +   H     +   +DY AFD SQ   
Sbjct: 1746 FAPYIRYIEMKLNEVLPDRFYIHSGKGLEELNDWVLKH-DFSGVCTESDYEAFDASQDQY 1804

Query: 463  AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
             V  E   ME L +P  LI+ + YIKT++ S+ G    MR +G A
Sbjct: 1805 IVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEA 1849


>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
            (ORF 1 protein) [Includes: RNA-directed RNA polymerase
            (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
            Allexivirus|Rep: RNA replication protein (194 kDa
            protein) (ORF 1 protein) [Includes: RNA-directed RNA
            polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
            Shallot virus X (ShVX)
          Length = 1718

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 28/106 (26%), Positives = 53/106 (50%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            +VL+   +  Y R    + +P N+F+   +TP   + F  +     + +  +DY+ +DQS
Sbjct: 1367 VVLLTTTMALYLRKKREQHQPDNVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQS 1426

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLT 588
            Q    +  E +K   L +P  ++  + +IKT+  +  G L  MRL+
Sbjct: 1427 QDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLS 1472


>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
            common latent virus|Rep: RNA-dependent RNA polymerase -
            Narcissus common latent virus
          Length = 1966

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 32/110 (29%), Positives = 55/110 (50%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A++  F P  +Y  +   +  P N +++ G+   +L+ +     K   +   +DY AFD 
Sbjct: 1701 AVLCRFAPYMRYIEMKVQEVLPRNFYIHSGKGLDELNAWVRRG-KFDGVCTESDYEAFDA 1759

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E + M  L +P  LI+ + YIKT++ S+ G    MR +G A
Sbjct: 1760 SQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEA 1809


>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
            Cherry necrotic rusty mottle virus
          Length = 2038

 Score = 50.8 bits (116), Expect = 4e-05
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYS 435
            H  ++    P  +Y      K  P NL+++ G+   DL  +    ++   +  C  +DY 
Sbjct: 1763 HHNVLCRLAPYVRYIEKKVFKALPRNLYIHSGKNFDDLQDWV---IQNNFVGTCTESDYE 1819

Query: 436  AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            AFD SQ    +  E   M  L++P  LI+ + ++K N  S+ G    MR TG A
Sbjct: 1820 AFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEA 1873



 Score = 34.3 bits (75), Expect = 4.2
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +2

Query: 41   KVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            K  F   LF E  N  E  +L  K+ A ++ ++ RSDPDW      IF K+Q
Sbjct: 1691 KPAFDHLLFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQ 1741


>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
           (ORF 1 protein) [Includes: RNA-directed RNA polymerase
           (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
           Carlavirus|Rep: RNA replication protein (152 kDa
           protein) (ORF 1 protein) [Includes: RNA-directed RNA
           polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
           Potato virus S (strain Peruvian)
          Length = 353

 Score = 50.8 bits (116), Expect = 4e-05
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = +1

Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
           +++  F P  +Y     ++  P   +++ G+   +L+++     K   +   +DY AFD 
Sbjct: 91  SVLCRFAPYMRYIEKKLNEVLPATFYIHSGKGLEELNKWVIES-KFEGVCTESDYEAFDA 149

Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
           SQ    V  E   M  L +P+ LI+ + YIKT++ S+ G    MR +G A
Sbjct: 150 SQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEA 199


>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
            polymerase - Sugarcane striate mosaic associated virus
          Length = 1937

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 31/112 (27%), Positives = 53/112 (47%)
 Frame = +1

Query: 262  HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441
            H  ++  F P  +Y         P N +++ G+    L+ +  ++    +    +DY AF
Sbjct: 1668 HHVVLARFSPWVRYIEKKLVSSLPDNYYIHSGKNFDQLNAWVKANNFVGECTE-SDYEAF 1726

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            D SQ    +  E   M+ L +P+ LI+ + YIK ++ S+ G    MR TG A
Sbjct: 1727 DASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEA 1778


>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
            Garlic latent virus
          Length = 1924

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH-VC--NDYSA 438
            ++++ F P  +Y      +  P   +++ G+   +L+++   +    + H  C  +DY A
Sbjct: 1659 SVLVRFAPYMRYIEKKVLEVLPKQYYIHSGKGLDELNQWVCDN----KFHGACTESDYEA 1714

Query: 439  FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            FD SQ    +  E   ME L +P  LI+ + YIKT++  + G L  MR +G A
Sbjct: 1715 FDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEA 1767



 Score = 34.3 bits (75), Expect = 4.2
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +2

Query: 41   KVPFQP----DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            +VP +P    DL  E ++  E  ++S K+ A+I+ +ANRS  DW      +FSK+Q
Sbjct: 1581 RVPLKPHHRHDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLADVGLVFSKSQ 1635


>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
            pitting-associated virus|Rep: Replicase - Rupestris stem
            pitting associated virus-1
          Length = 2161

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            A+++ F P  +Y      +   PN +++ G+   +L+ +  +      I   +DY AFD 
Sbjct: 1898 AVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTR-GFTGICTESDYEAFDA 1956

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
            SQ    +  E + M+ L +P  LI  + +IK ++ S+ G  + MR TG A
Sbjct: 1957 SQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEA 2006


>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
            Phlox virus S
          Length = 1990

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQH 456
            F P  +Y      +  P   +V+ G+   +L+ +    +K     VC  +DY AFD SQ 
Sbjct: 1730 FAPYMRYIEKKLHEVLPERYYVHSGKGLEELNSWV---IKGGFGGVCTESDYEAFDASQD 1786

Query: 457  GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
               V  E   ME L +P  LI+ + +IKT++ S+ G    MR +G A
Sbjct: 1787 QYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEA 1833


>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
            replicase - Cherry virus A
          Length = 2342

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 27/107 (25%), Positives = 53/107 (49%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            I+  F P+ +Y     ++  P N +++  +   +L R+  S+     +   +DY A+D S
Sbjct: 1372 ILCKFAPLNRYIEKKVTQSLPGNFYIHQKKNFDELERWVKSY-NFSGVCTESDYKAYDAS 1430

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            Q    +  E K +  L+  + LI+ + Y+K ++  + G L  +R TG
Sbjct: 1431 QDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTG 1477


>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
            symptomless virus|Rep: RNA-dependent RNA polymerase -
            Narcissus symptomless virus
          Length = 1871

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 28/105 (26%), Positives = 51/105 (48%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462
            F P  +Y     +   P   +++ G+   DL+ +  ++     +   +DY AFD SQ   
Sbjct: 1614 FAPYVRYIEKKLNDALPAKYYIHSGKNIDDLNDWVKAN-NFSGVCTESDYEAFDASQDHY 1672

Query: 463  AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
             +  E   M+ L +P  L++ + +IKT++ S+ G    MR +G A
Sbjct: 1673 IMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEA 1717


>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
           RNA replication protein (ORF 1 protein) [Includes:
           RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
           3.6.1.-)] - Chrysanthemum virus B (CVB)
          Length = 260

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +1

Query: 331 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQHGEAVVLERKKMERLSI 504
           P   +++ G+   +L+ +    +K     +C  +DY AFD SQ    V  E   ME L +
Sbjct: 15  PSRFYIHSGKGLEELNEWV---IKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGL 71

Query: 505 PSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
           P  LI+ + +IK ++ S+ G    MR +G A
Sbjct: 72  PRDLIEDYAFIKCHLGSKLGNFAIMRFSGEA 102


>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
            Flexiviridae|Rep: RNA-dependent RNA polymerase -
            Hippeastrum latent virus
          Length = 1971

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = +1

Query: 283  FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQH 456
            F P  +Y      +  P   +++ G+   +L  +   +       VC  +DY AFD SQ 
Sbjct: 1711 FAPYMRYIEKKLHQALPDKFYIHSGKGLEELDCWVKKYRFD---GVCTESDYEAFDASQD 1767

Query: 457  GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597
               V  E   M  L +P  L+  + YIKT++ S+ G    MR +G A
Sbjct: 1768 QYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEA 1814


>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
            158kDa replicase - Botrytis virus X
          Length = 1413

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 27/107 (25%), Positives = 49/107 (45%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            +VL+   +  Y R   +  +P N+F+   +T    + F          +  +DY+ +D+S
Sbjct: 1098 VVLLTTTLALYLRACRNSHQPDNVFIMCEKTSNQFNDFVKDWNFERDNYT-SDYTQYDKS 1156

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            Q G  +  E +K     +P  ++D +  IKT+       L  MRL+G
Sbjct: 1157 QDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSG 1203



 Score = 38.3 bits (85), Expect = 0.26
 Identities = 23/59 (38%), Positives = 31/59 (52%)
 Frame = +2

Query: 20   YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
            + + P   +PF P L+ E     E + LS KT A I   ANR DPD+    V +F K+Q
Sbjct: 1016 FMKVPKDPMPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQ 1073


>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
            virus A|Rep: RNA-dependent RNA polymerase - Grapevine
            virus A
          Length = 1707

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 28/108 (25%), Positives = 53/108 (49%)
 Frame = +1

Query: 268  AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447
            +++  FGPI +       +  P N+ +Y  +   DL ++A + ++ + +   +DY AFD+
Sbjct: 1423 SVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKWAKTWVESM-MGTDSDYEAFDR 1481

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            SQ  + + LE + +     P  LI  +  +K  +    G L  MR +G
Sbjct: 1482 SQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSG 1529


>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
            n=1; Indian citrus ringspot virus|Rep: Putative
            RNA-dependent RNA polymerase RdRp - Indian citrus
            ringspot virus
          Length = 1658

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = +1

Query: 274  VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK-PLQIHVCNDYSAFDQS 450
            V+++G + +Y R       P ++ +     P  +S +   +     Q H  ND+ AFDQS
Sbjct: 1392 VMLYGTMARYMRRIRISLCPSHIMINCETNPTQISSWVRENWDFSGQSHE-NDFEAFDQS 1450

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            Q    +  E  K +  SIP  +I  + ++K +     G +  MRL+G
Sbjct: 1451 QDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSG 1497


>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
           Replicase - Mint virus 2
          Length = 500

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +1

Query: 268 AIVLIFGP-IKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFD 444
           A++  FGP +++ ++   ++    N+ +Y  +   DL  ++  ++  + I   +DY AFD
Sbjct: 213 AVLCRFGPQLRRTEKALRAQ-LGDNVMIYSQKNYTDLDNWSRLYVDGM-IGTDSDYEAFD 270

Query: 445 QSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
           +SQ  + +  E + ++    P  LI+ +  +K  +    G L  MR +G
Sbjct: 271 RSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSG 319


>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
            Trichovirus|Rep: RNA-directed RNA polymerase - Apple
            chlorotic leaf spot virus (isolate apple) (ACLSV)
          Length = 1885

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 24/107 (22%), Positives = 47/107 (43%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            I++ F P  +Y     + + P N +++  +   +L  FA        + V +DY+AFD S
Sbjct: 1589 ILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFAKRFSNG-SMCVESDYTAFDVS 1647

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            Q    +  E + ++       ++  +  +K  +  + G    MR TG
Sbjct: 1648 QDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGFAIMRFTG 1694



 Score = 34.3 bits (75), Expect = 4.2
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 8    LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187
            L + + RH   K      L  +C    E ++LS K+ A I A++ RSD DW    + +F 
Sbjct: 1503 LAKVFLRHVPIKCGRDQRLLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFM 1561

Query: 188  KTQ 196
            K+Q
Sbjct: 1562 KSQ 1564


>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
            (ORF1 polyprotein) [Contains: Putative RNA-directed RNA
            polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
            protein]; n=18; Apple stem grooving virus|Rep: Genome
            polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
            [Contains: Putative RNA-directed RNA polymerase/helicase
            (EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
            grooving virus (strain Korea) (ASGV)
          Length = 2105

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQ-IHVCNDYSAFDQ 447
            ++  FGP+ +       +    + +++ G+  + L  F + + +      + +DY+AFD 
Sbjct: 1311 VLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDS 1370

Query: 448  SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591
            SQ    +  E   ++ L +       +  +K  +  + G L  MR TG
Sbjct: 1371 SQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTG 1418


>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
           Polyprotein - Blackberry virus X
          Length = 244

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 77  INLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
           +++NE+ +    K +A +  N+ RSDPDW+   + +F K Q
Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210


>UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14;
           Bacillus|Rep: Glycosyl transferase, putative - Bacillus
           anthracis
          Length = 392

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 29  HPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKIN 208
           HPN ++PFQPD   E +      +   K +  +Q   N+ D    YT+ R F        
Sbjct: 140 HPNAEIPFQPDEISEQLLYRMEHEFGVKPKNNLQFMHNKGDITLVYTS-RYFQPNSDLFG 198

Query: 209 EGSIF-GPWESMPDISLECMMPL 274
           E +IF GP  S    ++E  + L
Sbjct: 199 ENNIFIGPSISKRKTNVEFPLEL 221


>UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7;
           Crinivirus|Rep: RNA-dependent RNA polymerase - Lettuce
           infectious yellows virus
          Length = 476

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 536 SKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITST 712
           +K T  V+L+L       G P T+  NT   + ++ S YDI     +LVSGDDSL I S 
Sbjct: 284 AKATCGVDLEL-GTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSL-IFSR 341

Query: 713 SCSPRLGRRFSTPFSHIQKXVVKN 784
              P   +  +  F    K + K+
Sbjct: 342 KHLPNKTQEINKNFGMEAKYIEKS 365


>UniRef50_Q4PGK6 Cluster: Putative uncharacterized protein; n=1;
            Ustilago maydis|Rep: Putative uncharacterized protein -
            Ustilago maydis (Smut fungus)
          Length = 1657

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 477  TEENGAAFHSISSYRPPLLHQNQHYKSIWTFDLHAPYRASPALMTTTRITILPSFTASTT 656
            T+++ A+ HS SS R P   + +  K +  FD  +  RAS    +     +  S  ASTT
Sbjct: 1230 TDDDNASVHSNSSNRQPY-RELRASKKVHGFDSSSADRASSGFSSKLTSAVSVSTAASTT 1288

Query: 657  SPRKLS-WS 680
            SP   S WS
Sbjct: 1289 SPGDASGWS 1297


>UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14;
            Crinivirus|Rep: ORF 1a/1b fusion polyprotein - Beet
            pseudo-yellows virus
          Length = 2441

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 590  GEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITSTS 715
            G P T+  NT   + ++ S YD+     +LVSGDDSL  +  S
Sbjct: 2266 GSPNTWLSNTLVTLGIVLSTYDLRDIDLLLVSGDDSLIFSRKS 2308


>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
           Replicase - Lolium latent virus
          Length = 440

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 32  PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196
           P+  VPF  DL+ E       S   +K++  I+   NR DPDW+   + ++ K Q
Sbjct: 369 PDEPVPFIRDLW-EQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQDERMFVYLKAQ 422


>UniRef50_A3I102 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 522

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 605 YDDNTDYNIAVIYSEYDITTQTVLVSGDDS-LXITSTSCSPRLGRRFSTPFSHIQKXVVK 781
           YD+N   N  +IY + +I ++TV +   DS L + S + SP +  + +  + ++   ++ 
Sbjct: 29  YDENFKLNSRLIYDQVEILSETVRIGKKDSVLSLLSPNLSPAISLKGTEVYQYLSPWILV 88

Query: 782 NG 787
            G
Sbjct: 89  KG 90


>UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Hyperthermus butylicus DSM 5456|Rep:
           NADH-ubiquinone oxidoreductase chain 1 - Hyperthermus
           butylicus (strain DSM 5456 / JCM 9403)
          Length = 262

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 542 PTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSG 685
           P L   + + P   +PG PG Y   + Y++ + Y+   +T+  +LV G
Sbjct: 20  PILAFTIAVLPLTVIPGGPGVYGFTSPYSMLIAYALLSLTSIVILVMG 67


>UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7;
            Strawberry pallidosis associated virus|Rep: ORF 1a/1b
            fusion polyprotein - Strawberry pallidosis associated
            virus
          Length = 2451

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 590  GEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSL 697
            G P T+  NT   +A+I + YD+     +LVSGDDSL
Sbjct: 2276 GSPNTWLSNTLVTLAMILTHYDLDDIDLLLVSGDDSL 2312


>UniRef50_Q3JM69 Cluster: YO185-like protein; n=2; Burkholderia
           pseudomallei|Rep: YO185-like protein - Burkholderia
           pseudomallei (strain 1710b)
          Length = 1528

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 155 DWRYTAVRIFSKTQHKINEGSIFGPWESMPDISLECMMP 271
           DWRY A +   +  H + +G I+GPW+ +P  SL  + P
Sbjct: 419 DWRYQAPQ---RDPHALPDGIIYGPWKGLP--SLPALQP 452


>UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 3976

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 543  GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 442
            G + AME  K+ WN     F+P++D G+++L  V
Sbjct: 950  GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 983


>UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep:
            Non-structural polyprotein - Hepatitis E virus (strain
            Myanmar) (HEV)
          Length = 1693

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 590  GEPGTYDDNTDYNIAVIYSEYDITT-QTVLVSGDDSLXITS 709
            GEPGT   NT +N+AVI   YD    Q     GDDS+ + S
Sbjct: 1518 GEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCS 1558


>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep:
            Replicase - White ash mosaic virus
          Length = 954

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +1

Query: 271  IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450
            +VL+F  +  Y R    K +P  +F+   + P   + F          +  +DY  +DQS
Sbjct: 865  VVLLFITMALYLRKQRVKHQPDYVFIMCEENPSAFNEFIQGWEFSTPSYT-SDYKQYDQS 923

Query: 451  QHGEAVVLERKKMERLSIPSHLIDLHCYIK 540
            Q    +  E +K +   +P  + D + +++
Sbjct: 924  QDAVFLNFELRKAKHFGVPKFIRDCYKFLQ 953


>UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E
            virus|Rep: Nonstructural protein - Hepatitis E virus
          Length = 1717

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = +1

Query: 331  PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 510
            PPN+F YG      +   A S      +   ND+S FD +Q+  ++ LE   ME   +P 
Sbjct: 1454 PPNIF-YGDAFEESVFSAAISGAGSSMVFE-NDFSEFDSTQNNFSLGLECVIMEECGMPQ 1511

Query: 511  HLIDLHCYIKTNITSQ 558
             LI L+  +++  T Q
Sbjct: 1512 WLIRLYHLVRSAWTLQ 1527


>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
            T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1436

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 442  DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 567
            D+S     V  E K   +  +PSHL D HCY  T  T++  P
Sbjct: 883  DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,555,924
Number of Sequences: 1657284
Number of extensions: 17610518
Number of successful extensions: 46715
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 44684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46668
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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