BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_P21 (883 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 242 7e-63 UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 174 2e-42 UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 171 3e-41 UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 165 1e-39 UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 165 1e-39 UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 162 9e-39 UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 160 5e-38 UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 159 9e-38 UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 158 2e-37 UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 151 2e-35 UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 149 9e-35 UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 148 2e-34 UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 146 9e-34 UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 144 3e-33 UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 72 2e-11 UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 71 3e-11 UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 69 2e-10 UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 69 2e-10 UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 68 3e-10 UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 66 1e-09 UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 64 5e-09 UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 64 5e-09 UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 64 6e-09 UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 63 8e-09 UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 62 2e-08 UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 62 2e-08 UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 61 4e-08 UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 60 6e-08 UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 60 6e-08 UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 60 6e-08 UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 60 7e-08 UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 60 7e-08 UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 60 1e-07 UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 59 2e-07 UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 57 5e-07 UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 57 5e-07 UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 56 2e-06 UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 55 2e-06 UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 55 3e-06 UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 54 6e-06 UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 52 2e-05 UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 52 3e-05 UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 52 3e-05 UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 51 3e-05 UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 51 4e-05 UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 51 4e-05 UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 50 8e-05 UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 48 3e-04 UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 47 6e-04 UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 47 6e-04 UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 47 7e-04 UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 47 7e-04 UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 46 0.001 UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 46 0.002 UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 43 0.009 UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 42 0.016 UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 42 0.027 UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 38 0.26 UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 35 2.4 UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 35 2.4 UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 35 3.2 UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14; B... 35 3.2 UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7; Crin... 34 4.2 UniRef50_Q4PGK6 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2 UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14; Cri... 34 5.5 UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 34 5.5 UniRef50_A3I102 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5 UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1;... 34 5.5 UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7; Stra... 33 7.3 UniRef50_Q3JM69 Cluster: YO185-like protein; n=2; Burkholderia p... 33 7.3 UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella ve... 33 7.3 UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root... 33 7.3 UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 33 9.6 UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis... 33 9.6 UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 33 9.6 >UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx mori Macula-like latent virus|Rep: RNA-dependent RNA polymerase - Bombyx mori Macula-like latent virus Length = 1747 Score = 242 bits (593), Expect = 7e-63 Identities = 111/111 (100%), Positives = 111/111 (100%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA Sbjct: 1428 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 1487 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG Sbjct: 1488 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 1538 Score = 173 bits (420), Expect = 7e-42 Identities = 76/85 (89%), Positives = 81/85 (95%) Frame = +2 Query: 2 TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181 + LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI Sbjct: 1343 SSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 1402 Query: 182 FSKTQHKINEGSIFGPWESMPDISL 256 FSKTQHKINEGSIFGPW++ ++L Sbjct: 1403 FSKTQHKINEGSIFGPWKACQTLAL 1427 Score = 82.6 bits (195), Expect = 1e-14 Identities = 44/76 (57%), Positives = 46/76 (60%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSPRLGRRFSTPFSHI 763 L GEPGTYDDNTDYNIAVIYSEYDITTQTV VSGDDSL P Sbjct: 1536 LTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTF 1595 Query: 764 QKXVVKNGLXWXLXLG 811 +K V+NGL LG Sbjct: 1596 KKEFVRNGLFCGYYLG 1611 >UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Polyprotein - Grapevine rupestris vein feathering virus Length = 2068 Score = 174 bits (424), Expect = 2e-42 Identities = 75/111 (67%), Positives = 96/111 (86%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHDA+VL+ GP+KKYQR+FD+ DRP N+FVY G TP +++ + ++LKP + V NDY++ Sbjct: 1531 MHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKPGE-RVANDYTS 1589 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVV ERKKMERL+IPSHLIDLH ++KTN+++QFGPLTCMRLTG Sbjct: 1590 FDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTG 1640 Score = 114 bits (274), Expect = 3e-24 Identities = 49/82 (59%), Positives = 65/82 (79%) Frame = +2 Query: 11 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190 C A R P+ VPF +LF ECI LNE++QLS+KTQA+I AN +RSDPDWR++AVRIF+K Sbjct: 1449 CTAMLRSPSASVPFDENLFAECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAK 1508 Query: 191 TQHKINEGSIFGPWESMPDISL 256 TQHK+N+ SIFG W++ ++L Sbjct: 1509 TQHKVNDHSIFGGWKACQTLAL 1530 Score = 58.8 bits (136), Expect = 2e-07 Identities = 25/38 (65%), Positives = 31/38 (81%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDNTDYN+AV++ EY + + +VSGDDSL Sbjct: 1638 LTGEPGTYDDNTDYNLAVLHLEYLVGSTPCMVSGDDSL 1675 >UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat blue dwarf virus|Rep: Replicase-associated polyprotein - Oat blue dwarf virus Length = 2066 Score = 171 bits (415), Expect = 3e-41 Identities = 74/111 (66%), Positives = 94/111 (84%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHDA+VL+ GP+KKYQRVFD++DRP +L+++ GQTP +S + +HL P + + NDY+A Sbjct: 1499 MHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTPA-VKLANDYTA 1557 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLERKKMERLSIP HLI LH ++KT++ +QFGPLTCMRLTG Sbjct: 1558 FDQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVETQFGPLTCMRLTG 1608 Score = 125 bits (301), Expect = 2e-27 Identities = 55/83 (66%), Positives = 67/83 (80%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 LCRAY R P PF LFVECI+LNE++QL++KTQAVI NA RSDPDWR++AVRIFS Sbjct: 1416 LCRAYHRSPTTTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFS 1475 Query: 188 KTQHKINEGSIFGPWESMPDISL 256 KTQHK+NEGSIFG W++ ++L Sbjct: 1476 KTQHKVNEGSIFGAWKACQTLAL 1498 Score = 56.8 bits (131), Expect = 7e-07 Identities = 26/38 (68%), Positives = 28/38 (73%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDNTDYN+AVI EY +VSGDDSL Sbjct: 1606 LTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVSGDDSL 1643 >UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Polyprotein - Maize rayado fino virus Length = 2027 Score = 165 bits (401), Expect = 1e-39 Identities = 70/111 (63%), Positives = 91/111 (81%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHDA+VL+ GP+KKYQR FD +DRP L+V+ G TP++++ + +HL P + + NDY+A Sbjct: 1458 MHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPA-VKLANDYTA 1516 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVV ER KM RLSIP+ L+DLH Y+KTN+++QFGPLTCMRLTG Sbjct: 1517 FDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTG 1567 Score = 131 bits (316), Expect = 3e-29 Identities = 55/82 (67%), Positives = 68/82 (82%) Frame = +2 Query: 11 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190 CRAY R P PF PDL+ ECINLNE++QLS+KTQA I ANANRSDPDWR++AVRIF+K Sbjct: 1376 CRAYHRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAK 1435 Query: 191 TQHKINEGSIFGPWESMPDISL 256 TQHK+NEGS+FG W++ ++L Sbjct: 1436 TQHKVNEGSLFGSWKACQTLAL 1457 Score = 61.3 bits (142), Expect = 3e-08 Identities = 26/38 (68%), Positives = 32/38 (84%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDNTDYNIAV++ EY + + ++VSGDDSL Sbjct: 1565 LTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSL 1602 >UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-associated virus|Rep: Polyprotein - Citrus sudden death-associated virus Length = 2189 Score = 165 bits (401), Expect = 1e-39 Identities = 73/111 (65%), Positives = 91/111 (81%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHDA+VLI GP+KKYQRVFD +DRP +L+++ G TP +S + HL + + NDY+A Sbjct: 1637 MHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTA-VKLANDYTA 1695 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLERKKMERLSIP LIDLH ++KT++++QFGPLTCMRLTG Sbjct: 1696 FDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTG 1746 Score = 130 bits (314), Expect = 5e-29 Identities = 57/84 (67%), Positives = 67/84 (79%) Frame = +2 Query: 5 GLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIF 184 GLCRAY R P H F P LF ECINLNE++QLS+KTQA I NA RSDPDWR++AVRIF Sbjct: 1553 GLCRAYHRSPFHTEAFDPVLFAECINLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIF 1612 Query: 185 SKTQHKINEGSIFGPWESMPDISL 256 SKTQHK+NEGSIFG W++ ++L Sbjct: 1613 SKTQHKVNEGSIFGSWKACQTLAL 1636 Score = 56.4 bits (130), Expect = 9e-07 Identities = 25/38 (65%), Positives = 28/38 (73%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDN+DYN+AVI EY +VSGDDSL Sbjct: 1744 LTGEPGTYDDNSDYNLAVINCEYMAANTPTMVSGDDSL 1781 >UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow mosaic virus Length = 1776 Score = 162 bits (394), Expect = 9e-39 Identities = 95/238 (39%), Positives = 131/238 (55%), Gaps = 6/238 (2%) Frame = +2 Query: 2 TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181 T C+A+ R PN +PF P LF ECI LNEY+QLS+KTQA I +NA+RSDPDWRYT VRI Sbjct: 1363 TNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRI 1422 Query: 182 FSKTQHKINEGSIFGPWESMPDISLE---CMMPLS*FLARSRNISEFSTVKIVLPTCLCM 352 F+K+QHK+N+GSIFG W++ ++L ++ L R I + + C Sbjct: 1423 FAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKT 1482 Query: 353 EAKLHTISLGLLRP---I*NHYKFMSAMTTLRLTNLSMVRPLSWNGRKWSGFPFHLIL*T 523 ++L S L+ I N Y ++ + G H+ L T Sbjct: 1483 PSELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFESLK-MHRVGIPRHLIDLHIYLKT 1541 Query: 524 SIATSKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 +++T L L GEPGTYDDNTDYN+AVI+S+Y I+ ++VSGDDS+ Sbjct: 1542 NVSTQFGPL-------TCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIMVSGDDSV 1592 Score = 151 bits (366), Expect = 2e-35 Identities = 65/111 (58%), Positives = 86/111 (77%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L GP+KKYQR+ D DRP ++ + G+TP +LS ++ S LK ++CNDY++ Sbjct: 1448 MHDFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKG-DAYICNDYTS 1506 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAV+ E KM R+ IP HLIDLH Y+KTN+++QFGPLTCMRLTG Sbjct: 1507 FDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTG 1557 >UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovirus|Rep: RNA replicase polyprotein - Kennedya yellow mosaic virus (strain Jervis bay) (KYMV) Length = 1874 Score = 160 bits (388), Expect = 5e-38 Identities = 70/111 (63%), Positives = 91/111 (81%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L GP+KKYQR+FD+ DRPP+L+ + G++P DLS + +HL QI + NDY+A Sbjct: 1552 MHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHLTG-QIKLTNDYTA 1610 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGE+V+LE KM+RLSIPSHLI LH ++KTN+ +QFGPLTCMRLTG Sbjct: 1611 FDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNVATQFGPLTCMRLTG 1661 Score = 121 bits (292), Expect = 2e-26 Identities = 50/83 (60%), Positives = 68/83 (81%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 LC+AY+R+P H PF P LF ECI LN+Y+QLS+KTQA + AN +RSDPDWR+TAV+IF+ Sbjct: 1469 LCKAYRRNPTHVGPFNPALFAECIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFA 1528 Query: 188 KTQHKINEGSIFGPWESMPDISL 256 K+QHK+N+ SIFG W++ ++L Sbjct: 1529 KSQHKVNDASIFGNWKACQTLAL 1551 Score = 61.7 bits (143), Expect = 2e-08 Identities = 26/38 (68%), Positives = 33/38 (86%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDN+DYN+AVI+S++D+ V+VSGDDSL Sbjct: 1659 LTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSL 1696 >UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep: Replicase - Grapevine fleck virus Length = 1949 Score = 159 bits (386), Expect = 9e-38 Identities = 68/111 (61%), Positives = 87/111 (78%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L+ GP+KKYQR+ DS+DRP +L+++ GQTP+ LS + +HL P +H+ NDY+A Sbjct: 1633 MHDYLILVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP-SVHLANDYTA 1691 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLE KM R SIP I LH ++KTNI QFGPLTCMR+TG Sbjct: 1692 FDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITG 1742 Score = 106 bits (254), Expect = 9e-22 Identities = 50/83 (60%), Positives = 62/83 (74%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 L RAY R P VPF P LF CI N+++QL++KTQA IQANA RSDPDWR+T VRIFS Sbjct: 1551 LQRAYCRSPE-PVPFDPVLFASCIAENDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFS 1609 Query: 188 KTQHKINEGSIFGPWESMPDISL 256 KTQHK+NE S+F W++ ++L Sbjct: 1610 KTQHKVNENSLFTSWKACQTLAL 1632 Score = 61.3 bits (142), Expect = 3e-08 Identities = 25/38 (65%), Positives = 32/38 (84%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 + GEPGTYDDNTDYN+A++Y++Y + VLVSGDDSL Sbjct: 1740 ITGEPGTYDDNTDYNLAILYTQYLLHRTPVLVSGDDSL 1777 >UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow mosaic virus Length = 1844 Score = 158 bits (384), Expect = 2e-37 Identities = 67/111 (60%), Positives = 88/111 (79%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L+ GP+KKYQR+FD+ DRPPN++ + G+TP L + HL + NDY+A Sbjct: 1522 MHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTA 1581 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGE+VVLE KM+RL+IPSHLI LH ++KTN+++QFGPLTCMRLTG Sbjct: 1582 FDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTG 1632 Score = 130 bits (314), Expect = 5e-29 Identities = 54/83 (65%), Positives = 69/83 (83%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 LCRAY R PN VPF P+LF ECI+LNEY+QLS+KTQ+ I ANA+RSDPDWR+T V+IF+ Sbjct: 1439 LCRAYSRQPNSTVPFNPELFAECISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFA 1498 Query: 188 KTQHKINEGSIFGPWESMPDISL 256 K QHK+N+GSIFG W++ ++L Sbjct: 1499 KAQHKVNDGSIFGSWKACQTLAL 1521 Score = 67.7 bits (158), Expect = 4e-10 Identities = 28/38 (73%), Positives = 34/38 (89%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDNTDYN+AVIYS+YD+ + ++VSGDDSL Sbjct: 1630 LTGEPGTYDDNTDYNLAVIYSQYDVGSCPIMVSGDDSL 1667 >UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovirus|Rep: RNA replicase polyprotein - Eggplant mosaic virus Length = 1839 Score = 151 bits (366), Expect = 2e-35 Identities = 67/111 (60%), Positives = 87/111 (78%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MH I+L+ GP+KKYQR+FDSKDRPP+++ + G+TP LS++ +HL ++ NDY+A Sbjct: 1518 MHGYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHLSGSS-YIANDYTA 1576 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLE KM RLSIP LI LH ++K ++ +QFGPLTCMRLTG Sbjct: 1577 FDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVDTQFGPLTCMRLTG 1627 Score = 118 bits (284), Expect = 2e-25 Identities = 51/85 (60%), Positives = 66/85 (77%) Frame = +2 Query: 2 TGLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRI 181 + LC AY R+PN +PFQP+LF ECI +N+Y+QLS+KTQA I AN RSDPDWR TAVRI Sbjct: 1433 SSLCLAYGRNPNSVLPFQPELFSECICINDYAQLSSKTQATIVANHQRSDPDWRLTAVRI 1492 Query: 182 FSKTQHKINEGSIFGPWESMPDISL 256 F+K QHK+N+ SIF W++ ++L Sbjct: 1493 FAKAQHKVNDASIFSGWKACQTLAL 1517 Score = 64.5 bits (150), Expect = 3e-09 Identities = 27/47 (57%), Positives = 35/47 (74%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSP 724 L GEPGTYDDN+DYN+AVIYS+Y + +L+SGDDS+ + SP Sbjct: 1625 LTGEPGTYDDNSDYNLAVIYSQYSLNGHPILISGDDSVLCGTPPPSP 1671 >UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum latent virus|Rep: RNA replicase polyprotein - Erysimum latent virus (ELV) Length = 1748 Score = 149 bits (361), Expect = 9e-35 Identities = 66/111 (59%), Positives = 84/111 (75%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L GP+KKYQR+FD +RP +++ + G TP+DL R+ S HL+ NDY+A Sbjct: 1425 MHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPHDLRRWCSKHLETSHC-TTNDYTA 1483 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVV E KM RLSIP +LI LH ++KTN+ +QFGPLTCMRLTG Sbjct: 1484 FDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNVETQFGPLTCMRLTG 1534 Score = 121 bits (291), Expect = 3e-26 Identities = 49/82 (59%), Positives = 69/82 (84%) Frame = +2 Query: 11 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190 C+ Y+R PN ++PF LF+ECI +N+Y+QLS+KTQA I ANA+RSDPDWR+T V+IF+K Sbjct: 1343 CQVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAK 1402 Query: 191 TQHKINEGSIFGPWESMPDISL 256 +QHK+N+GSIFGPW++ ++L Sbjct: 1403 SQHKVNDGSIFGPWKACQTLAL 1424 Score = 61.7 bits (143), Expect = 2e-08 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSPRLGRRFSTPFSHI 763 L GEPGTYDDNTDYN+AV+ +YD+ LVSGDDS S + SPR F H+ Sbjct: 1532 LTGEPGTYDDNTDYNLAVLNLQYDLRKTPTLVSGDDS--YLSGTLSPRSNWPFVKELLHL 1589 Query: 764 Q 766 + Sbjct: 1590 R 1590 >UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tymoviridae|Rep: Replicase-associated protein - Poinsettia mosaic virus Length = 1987 Score = 148 bits (359), Expect = 2e-34 Identities = 66/111 (59%), Positives = 84/111 (75%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD +VL GP+K YQR+FDS++RP N++ + G +P ++S +A HL+ H NDY+A Sbjct: 1455 MHDYVVLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHT-NDYTA 1513 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVV E KM RLSIP LI+LH Y+K N+ +QFGPLTCMRLTG Sbjct: 1514 FDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTG 1564 Score = 123 bits (296), Expect = 7e-27 Identities = 54/82 (65%), Positives = 65/82 (79%) Frame = +2 Query: 11 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSK 190 CRAY RHP VPF LF ECIN+NE++Q SNKT++ I ANA+RSDPDWR TAV+IFSK Sbjct: 1373 CRAYNRHPQAVVPFDELLFAECININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSK 1432 Query: 191 TQHKINEGSIFGPWESMPDISL 256 TQHKINE SIFG W++ ++L Sbjct: 1433 TQHKINEASIFGSWKACQTLAL 1454 Score = 62.9 bits (146), Expect = 1e-08 Identities = 26/38 (68%), Positives = 32/38 (84%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSL 697 L GEPGTYDDNTDYN+AVIYS+Y + ++VSGDDS+ Sbjct: 1562 LTGEPGTYDDNTDYNLAVIYSKYLVLDHPIMVSGDDSV 1599 >UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep: Replicase - Dulcamara mottle virus Length = 1742 Score = 146 bits (353), Expect = 9e-34 Identities = 65/111 (58%), Positives = 87/111 (78%) Frame = +1 Query: 259 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 438 MHD ++L GP+KKYQR FD KD P +++ + G+TP DLS + ++L Q+++ NDY++ Sbjct: 1421 MHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSIWCKTNLSH-QVYIENDYTS 1479 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 FDQSQHGEAVVLE KM+RL IP LI+LH ++KTN+ +QFGPLTCMRLTG Sbjct: 1480 FDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNVDTQFGPLTCMRLTG 1530 Score = 124 bits (298), Expect = 4e-27 Identities = 50/83 (60%), Positives = 67/83 (80%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 LC Y RHP+ +PF P LF ECI +N+Y+QLS+KT+A I ANA RSDPDWRYT+V+IF+ Sbjct: 1338 LCSVYNRHPSESIPFDPVLFAECICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFA 1397 Query: 188 KTQHKINEGSIFGPWESMPDISL 256 K+QHK+N+GSIFG W++ ++L Sbjct: 1398 KSQHKVNDGSIFGNWKACQTLAL 1420 Score = 63.7 bits (148), Expect = 6e-09 Identities = 28/47 (59%), Positives = 34/47 (72%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSGDDSLXITSTSCSP 724 L GEPGTYDDNTDYN+AVIYS+Y + + LVSGDDS+ +P Sbjct: 1528 LTGEPGTYDDNTDYNLAVIYSQYSMGSTPCLVSGDDSVVAGQPPVNP 1574 >UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe virus|Rep: Replicase RdRp - Grapevine Red Globe virus Length = 424 Score = 144 bits (349), Expect = 3e-33 Identities = 64/110 (58%), Positives = 85/110 (77%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 HDA++L+ GP+KKYQR FD+K RP ++ + TP++LS + +H+K Q H+ NDY+A+ Sbjct: 23 HDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFELSTWCQAHMKT-QHHLTNDYTAY 81 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 DQSQ GEAVVLER KM R+SIP LIDLH ++KTN+ +Q GPLT MRLTG Sbjct: 82 DQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLKTNVDTQLGPLTSMRLTG 131 Score = 48.8 bits (111), Expect = 2e-04 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEY--DITTQTVLVSGDD 691 L GEPGTYDDN+DYN+AV +++ D VL+SGDD Sbjct: 129 LTGEPGTYDDNSDYNLAVTAAKFILDPEVHAVLISGDD 166 >UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus X|Rep: RNA replication protein (165 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX) Length = 1456 Score = 71.7 bits (168), Expect = 2e-11 Identities = 39/106 (36%), Positives = 58/106 (54%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V++FG + +Y R F +P +F+ TP D+S +A ++ + + NDY+AFDQSQ Sbjct: 1191 VMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQ 1250 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + IP +I + IKTN G L+ MRLTG Sbjct: 1251 DGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTG 1296 Score = 35.9 bits (79), Expect = 1.4 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDITTQTVLV-SGDDSLXITSTSCSPRLGRRF 742 L GE T+D NT+ NIA ++++DI T V +GDDS + C P + F Sbjct: 1294 LTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDS----ALDCVPEVKHSF 1343 >UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3; Potexvirus|Rep: RNA replication protein (176 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic potexvirus (PMV) Length = 1547 Score = 71.3 bits (167), Expect = 3e-11 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS---HLKPLQIHVCNDY 432 H A V++FG + +Y R +P ++ + TP DLS +A+ H K + ND+ Sbjct: 1272 HQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDF 1331 Query: 433 SAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 +AFDQSQ G + E K SIP ++D + IKTN G L MRLTG Sbjct: 1332 TAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTG 1384 Score = 36.3 bits (80), Expect = 1.0 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 14/243 (5%) Frame = +2 Query: 8 LCRAYKR--H-PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVR 178 L +YKR H P +PF+ DL+ ++ + + LS K + +I+ R PD+ + Sbjct: 1185 LFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLS-KPENMIKNGMARQSPDYDPNVIS 1243 Query: 179 IFSKTQ--HKINE-GSI-FGPWESMPDISLECMM---PLS*FLARSRNISEFSTVKIVLP 337 +F K+Q K+ + G+I P +++ +M ++ ++ R R + + + ++I Sbjct: 1244 LFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRI--- 1300 Query: 338 TCLCMEAKLHTISLGLLRPI*NHYKFMSAMTTLRLTNLSMVRP---LSWNGRKWSGFPFH 508 C L + + G H+KF T + L + K Sbjct: 1301 NCEMTPEDLSSWAAGEG----GHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIP 1356 Query: 509 LIL*TSIATSKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTV-LVSG 685 + + T K ++ L L GE T+D NT+ NIA +++++I T L +G Sbjct: 1357 EDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAG 1416 Query: 686 DDS 694 DDS Sbjct: 1417 DDS 1419 >UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: Replicase - Botrytis virus F Length = 1896 Score = 68.9 bits (161), Expect = 2e-10 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDR---PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 ++L +GP Y R D + R PP+++++ +T D +F ++H + DY+A+ Sbjct: 1622 VLLAWGP---YARYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTAY 1678 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 D SQ V E M RL P +I+ + +K +ITS FGPL MR +G Sbjct: 1679 DASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASITSHFGPLAIMRFSG 1728 Score = 39.1 bits (87), Expect = 0.15 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +2 Query: 50 FQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 F L EC N+ L++K A + NA RSDP W +++F K Q Sbjct: 1549 FNDSLLEECRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQ 1597 >UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5; Potexvirus|Rep: RNA replication protein (186 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic virus (NMV) Length = 1643 Score = 68.9 bits (161), Expect = 2e-10 Identities = 37/106 (34%), Positives = 58/106 (54%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R + +P N+F+ TP DL +F S + ND++AFDQSQ Sbjct: 1327 VMLYGTMARYLRKMRRRFQPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQ 1386 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + +IP+ +I+ + YIK N G L MRL+G Sbjct: 1387 DGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNAAIFLGTLGIMRLSG 1432 >UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Potexvirus|Rep: Replication-associated protein - Opuntia virus X Length = 1555 Score = 68.1 bits (159), Expect = 3e-10 Identities = 36/106 (33%), Positives = 56/106 (52%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R +P N+F+ +TP D+ R+A H ++ NDY+AFDQSQ Sbjct: 1294 VMLYGTMARYMRRVREVFQPANIFINCERTPEDMDRWAREHWNFNRLSYANDYTAFDQSQ 1353 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K IP I+ + +K + + G L MRLTG Sbjct: 1354 DGAMLQFEVLKARHHCIPEEFIEGYIDLKCSSKTFLGILKIMRLTG 1399 >UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4; Potexvirus|Rep: RNA replication protein (150 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild yellow edge-associated virus (SMYEaV) Length = 1323 Score = 66.1 bits (154), Expect = 1e-09 Identities = 37/108 (34%), Positives = 60/108 (55%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A V+++G + +Y R +P N+F+ +TP DL +A ++ + ND++AFDQ Sbjct: 1057 APVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFDQ 1116 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 SQ G + E K + +IPS +I+ + +KTN G L MRL+G Sbjct: 1117 SQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSG 1164 Score = 45.6 bits (103), Expect = 0.002 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 10/231 (4%) Frame = +2 Query: 32 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ--HKI 205 P + +PF DL+ C N + + LS +++ A R DPD+ +++F K+Q K+ Sbjct: 980 PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFPINEIKLFLKSQWVKKV 1038 Query: 206 NE-GSIFGPWESMPDISLECMM---PLS*FLARSRNISEFSTVKI---VLPTCLCMEAKL 364 + G + P +++ + +M ++ ++ R R + + S + I P L AK Sbjct: 1039 EKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKA 1098 Query: 365 HTISLGLLRPI*NHYKFMSAMTTLRLTNLSMVRPLSWNGRKWSGFPFHLIL*TSIATSKP 544 + GL N + + +++ K+ P +I S K Sbjct: 1099 NWNFEGLAHS--NDFTAFDQSQDGAMLQFEVIK------AKFHNIPSDII--NSYVELKT 1148 Query: 545 TLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLV-SGDDS 694 +V L + L GE T+D NT+ +IA +++Y + V +GDDS Sbjct: 1149 NAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDS 1199 >UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep: RNA-dependent RNA polymerase - Tulip virus X Length = 1361 Score = 64.1 bits (149), Expect = 5e-09 Identities = 36/108 (33%), Positives = 57/108 (52%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A V+++G + +Y R + P N+ + +TP DLSR+ +H + ND++AFDQ Sbjct: 1093 AAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQ 1152 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 SQ G + E K + ++P +I+ + IK G L MRLTG Sbjct: 1153 SQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTG 1200 >UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic virus|Rep: RNA replicase - Cymbidium mosaic virus Length = 1417 Score = 64.1 bits (149), Expect = 5e-09 Identities = 33/106 (31%), Positives = 56/106 (52%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R + +P ++F+ +TP D ++F H Q+ ND++AFDQSQ Sbjct: 1120 VMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSYKQVAHTNDFTAFDQSQ 1179 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 + E K +IP +I+ + IK G L+ MRL+G Sbjct: 1180 DAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG 1225 >UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4; Potexvirus|Rep: RNA replication protein (156 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica mosaic potexvirus (P1AMV) Length = 1385 Score = 63.7 bits (148), Expect = 6e-09 Identities = 35/106 (33%), Positives = 58/106 (54%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R F P N+ + +TP DLSR+ ++ + ND++AFDQSQ Sbjct: 1119 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 1178 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + ++P +I+ + IK + G L+ MRLTG Sbjct: 1179 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 1224 >UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep: Replicase protein - Nerine virus X Length = 1504 Score = 63.3 bits (147), Expect = 8e-09 Identities = 31/106 (29%), Positives = 56/106 (52%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R + +P +F+ + P D+++F + ND++AFDQSQ Sbjct: 1246 VMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIKQGWNFKRQAYSNDFTAFDQSQ 1305 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + +P+ +I+ + +IK N G L MRL+G Sbjct: 1306 DGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSG 1351 >UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep: ORF 1 - Chenopodium mosaic virus X Length = 1571 Score = 62.1 bits (144), Expect = 2e-08 Identities = 34/98 (34%), Positives = 54/98 (55%) Frame = +1 Query: 298 KYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 477 +Y R ++ +P N+F+ TP DL++F + + ND++AFDQSQ G + E Sbjct: 1295 RYIRKMRARFQPDNIFINCEATPEDLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFE 1354 Query: 478 RKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 K + +IP+ +I+ + YIK N G L MRL+G Sbjct: 1355 VMKAKFFNIPADIIEGYIYIKLNAVIFLGTLGIMRLSG 1392 >UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5; Potexvirus|Rep: RNA replication protein (147 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover mosaic virus (strain O) (WCMV) Length = 1294 Score = 61.7 bits (143), Expect = 2e-08 Identities = 36/106 (33%), Positives = 56/106 (52%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+I+G + +Y R F ++ P +FV TP D + F + ND++AFDQSQ Sbjct: 1026 VMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQ 1085 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + +IP +I+ + IKT+ G L+ MRL+G Sbjct: 1086 DGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSG 1131 Score = 37.5 bits (83), Expect = 0.45 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +2 Query: 32 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 P +PF PDL+ C E + L A++ A A R PD+ A+ +F K+Q Sbjct: 946 PQDPIPFNPDLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFDSHAIALFLKSQ 999 >UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase - Hosta virus X Length = 1507 Score = 60.9 bits (141), Expect = 4e-08 Identities = 35/110 (31%), Positives = 54/110 (49%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 H V+++G + +Y R + P ++ + +TP +S F + ND++AF Sbjct: 1224 HQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAF 1283 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 DQSQ G + E K + +IP +I + IKTN G L MRLTG Sbjct: 1284 DQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTG 1333 >UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana mild mosaic virus|Rep: RNA-dependant RNA polymerase - Banana mild mosaic virus Length = 1771 Score = 60.5 bits (140), Expect = 6e-08 Identities = 30/105 (28%), Positives = 55/105 (52%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462 F P +Y +++ P N +++ G+ DL+ + + + + +DY AFD SQ + Sbjct: 1502 FAPYVRYMEKIVNENLPKNFYIHNGKNFDDLNDYVKKNNFSGRC-IESDYEAFDASQDSQ 1560 Query: 463 AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 + E M R+++P ID + ++K N+ S+ G + MR TG A Sbjct: 1561 ILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEA 1605 >UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep: Replicase - Poplar mosaic virus Length = 1992 Score = 60.5 bits (140), Expect = 6e-08 Identities = 33/110 (30%), Positives = 59/110 (53%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A++ F P +Y + ++ PPN +++ G++ +L + + K + +DY AFD Sbjct: 1728 AVLCRFAPYMRYIEMKLNEVLPPNFYIHSGKSLEELDAWVKRY-KFSGVCTESDYEAFDA 1786 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E M+ L +P+ LI+ + YIKT++ S+ G MR +G A Sbjct: 1787 SQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEA 1836 >UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino mosaic virus|Rep: RNA-directed RNA polymerase - Pepino mosaic virus Length = 1439 Score = 60.5 bits (140), Expect = 6e-08 Identities = 33/106 (31%), Positives = 57/106 (53%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R + +P ++F+ T DL++F + ND++AFDQSQ Sbjct: 1170 VMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAFDQSQ 1229 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K + +IP+ +I+ + IK N G L+ MRL+G Sbjct: 1230 DGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSG 1275 >UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA polymerase - Apple stem pitting virus Length = 2185 Score = 60.1 bits (139), Expect = 7e-08 Identities = 35/110 (31%), Positives = 58/110 (52%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A++ F P +Y + P NL+++ G+ DL+ + ++H K + +DY AFD Sbjct: 1917 AVLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDDLAEWVTAH-KFNGVCTESDYEAFDA 1975 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E + M+ L +P LI + +IKT++ S+ G MR TG A Sbjct: 1976 SQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEA 2025 >UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster mushroom spherical virus|Rep: RNA-dependent RNA polymerase - Oyster mushroom spherical virus Length = 1581 Score = 60.1 bits (139), Expect = 7e-08 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH-VCNDYSAFDQSQHG 459 FGP +Y + P ++ YGG DL ++A H+ + NDY+A+D+S G Sbjct: 1280 FGPYIRYLACKLREHSPDHVMHYGGMDLNDLGQWAREHVPSKRTKSFTNDYTAYDKSCRG 1339 Query: 460 EAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGR 594 E + E M +IP +I+LH + +TS G L MR +G+ Sbjct: 1340 ETLAFEICIMRLFNIPEWIIELHVELTLCVTSALGKLGIMRTSGQ 1384 >UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep: ORF1=155k - Bamboo mosaic virus Length = 1365 Score = 59.7 bits (138), Expect = 1e-07 Identities = 34/110 (30%), Positives = 54/110 (49%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 + + V+IFG + +Y R K P N+ + S++ +H K ++ ND+ A+ Sbjct: 1087 YQSTVMIFGTMARYMRRVREKFCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAY 1146 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 DQSQ G + E K +P+ LI+ + +K N G L MRLTG Sbjct: 1147 DQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTG 1196 >UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis virus|Rep: Replicase - Coleus vein necrosis virus Length = 1977 Score = 58.8 bits (136), Expect = 2e-07 Identities = 38/110 (34%), Positives = 55/110 (50%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A++ F P +Y + + P N +V+ G+ +LS + K I +DY AFD Sbjct: 1709 AVLCRFAPYMRYIEMKLQEVLPSNFYVHSGKGLDELSEWVKKG-KFEGICTESDYEAFDA 1767 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E K ME L IP LI + YIKT++ S+ G MR +G A Sbjct: 1768 SQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEA 1817 >UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Potexvirus|Rep: Replication-associated protein - Schlumbergera virus X Length = 377 Score = 57.2 bits (132), Expect = 5e-07 Identities = 35/106 (33%), Positives = 53/106 (50%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V+++G + +Y R +P ++ + TP LS++A + + NDY+AFDQSQ Sbjct: 116 VMLYGTMARYMRRVREVFQPKDIMINCETTPEALSQWALENWNFNRTSYANDYTAFDQSQ 175 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K SIP ID + +K + G L MRLTG Sbjct: 176 DGAMLQFEILKARHHSIPDVYIDGYVELKCCSKTFLGVLKIMRLTG 221 >UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet potato chlorotic fleck virus|Rep: RNA dependent RNA polymerase - Sweet potato chlorotic fleck virus Length = 2090 Score = 57.2 bits (132), Expect = 5e-07 Identities = 32/112 (28%), Positives = 59/112 (52%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 H ++ F P +Y + ++ P N +++ G++ +L+ + + ++ +DY AF Sbjct: 1823 HHIVLARFAPFIRYIEMKVNEALPKNYYIHSGKSLDELNNWVIGN-DFTRVCTESDYEAF 1881 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 D SQ + E ME L +P LI+ + YIKT++ S+ G + MR +G A Sbjct: 1882 DASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEA 1933 >UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase - Garlic virus C Length = 1550 Score = 55.6 bits (128), Expect = 2e-06 Identities = 29/106 (27%), Positives = 52/106 (49%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 VL+ + Y R +P N+F+ +TP + F + + + +DY+ +DQSQ Sbjct: 1211 VLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQ 1270 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 + E +K +P ++D + +IKT+ + G L MRL+G Sbjct: 1271 DAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSG 1316 Score = 34.3 bits (75), Expect = 4.2 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +2 Query: 584 LPGEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITSTSCSPRLGRRFSTP-FS 757 L GE T+D NT+ NIA + + +T +GDD + +C R G ++S P FS Sbjct: 1314 LSGEGPTFDANTECNIAYDALRFQLDSTVKACYAGDD--LVRDKACDERPGWKYSEPLFS 1371 Query: 758 HIQKXVVKN 784 K +V N Sbjct: 1372 LKAKPLVTN 1380 Score = 33.5 bits (73), Expect = 7.3 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = +2 Query: 32 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 P F L+ C L + LS T A +Q A R DPD+ A+ +F+K+Q Sbjct: 1132 PKETQAFDKRLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPENAIALFNKSQ 1185 >UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum debilitation-associated RNA virus|Rep: Polyprotein - Sclerotinia sclerotiorum debilitation-associated RNA virus Length = 1700 Score = 55.2 bits (127), Expect = 2e-06 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Frame = +1 Query: 274 VLIFGPIKKY-QRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 V+ G + +Y +R+FD PN++++ +T D S + + ND AFD S Sbjct: 1323 VMATGTLSRYMRRMFDKLCTNPNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDAS 1382 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTG 591 Q G V ER E L +P LID Y+ T I S G ++ MRL+G Sbjct: 1383 QDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSG 1429 >UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Replicase - Garlic virus A Length = 1625 Score = 54.8 bits (126), Expect = 3e-06 Identities = 29/107 (27%), Positives = 54/107 (50%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 +VL+ + Y R + +P N+F+ +TP + F + + + +DY+ +DQS Sbjct: 1285 VVLLTTTMALYLRKKREQHQPDNVFIMCERTPDQFNNFVLTKWDFSRPNYTSDYTQYDQS 1344 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 Q + E +K L +P ++ + +IKT+ + G L MRL+G Sbjct: 1345 QDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVGNLAIMRLSG 1391 >UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10; Carlavirus|Rep: RNA replication protein (147 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M (strain Russian) (PVM) Length = 1968 Score = 53.6 bits (123), Expect = 6e-06 Identities = 33/110 (30%), Positives = 57/110 (51%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A++ F P +Y + + P N +++ G+ +L + K +I +DY AFD Sbjct: 1703 AVLCRFAPYMRYIEMKVHEVLPKNYYIHSGKGLEELDAWVKKG-KFDRICTESDYEAFDA 1761 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E + M+ L +PS LI+ + +IKT++ S+ G MR +G A Sbjct: 1762 SQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEA 1811 >UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5; Potexvirus|Rep: RNA replication protein (152 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic virus Length = 1335 Score = 52.0 bits (119), Expect = 2e-05 Identities = 29/106 (27%), Positives = 50/106 (47%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 453 V++FG + +Y R +P + + + +S++ S+ ND++A+DQSQ Sbjct: 1057 VMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNHRLPAYTNDFTAYDQSQ 1116 Query: 454 HGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 G + E K IP +++ + +K N G L MRLTG Sbjct: 1117 DGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTG 1162 >UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Replicase - Daphne virus S Length = 2004 Score = 51.6 bits (118), Expect = 3e-05 Identities = 32/105 (30%), Positives = 52/105 (49%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462 F P +Y + ++ P +++ G+ +L+ + H + +DY AFD SQ Sbjct: 1746 FAPYIRYIEMKLNEVLPDRFYIHSGKGLEELNDWVLKH-DFSGVCTESDYEAFDASQDQY 1804 Query: 463 AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 V E ME L +P LI+ + YIKT++ S+ G MR +G A Sbjct: 1805 IVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEA 1849 >UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4; Allexivirus|Rep: RNA replication protein (194 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Shallot virus X (ShVX) Length = 1718 Score = 51.6 bits (118), Expect = 3e-05 Identities = 28/106 (26%), Positives = 53/106 (50%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 +VL+ + Y R + +P N+F+ +TP + F + + + +DY+ +DQS Sbjct: 1367 VVLLTTTMALYLRKKREQHQPDNVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQS 1426 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLT 588 Q + E +K L +P ++ + +IKT+ + G L MRL+ Sbjct: 1427 QDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLS 1472 >UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus common latent virus|Rep: RNA-dependent RNA polymerase - Narcissus common latent virus Length = 1966 Score = 51.2 bits (117), Expect = 3e-05 Identities = 32/110 (29%), Positives = 55/110 (50%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A++ F P +Y + + P N +++ G+ +L+ + K + +DY AFD Sbjct: 1701 AVLCRFAPYMRYIEMKVQEVLPRNFYIHSGKGLDELNAWVRRG-KFDGVCTESDYEAFDA 1759 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E + M L +P LI+ + YIKT++ S+ G MR +G A Sbjct: 1760 SQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEA 1809 >UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase - Cherry necrotic rusty mottle virus Length = 2038 Score = 50.8 bits (116), Expect = 4e-05 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYS 435 H ++ P +Y K P NL+++ G+ DL + ++ + C +DY Sbjct: 1763 HHNVLCRLAPYVRYIEKKVFKALPRNLYIHSGKNFDDLQDWV---IQNNFVGTCTESDYE 1819 Query: 436 AFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 AFD SQ + E M L++P LI+ + ++K N S+ G MR TG A Sbjct: 1820 AFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEA 1873 Score = 34.3 bits (75), Expect = 4.2 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +2 Query: 41 KVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 K F LF E N E +L K+ A ++ ++ RSDPDW IF K+Q Sbjct: 1691 KPAFDHLLFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQ 1741 >UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20; Carlavirus|Rep: RNA replication protein (152 kDa protein) (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus S (strain Peruvian) Length = 353 Score = 50.8 bits (116), Expect = 4e-05 Identities = 31/110 (28%), Positives = 55/110 (50%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 +++ F P +Y ++ P +++ G+ +L+++ K + +DY AFD Sbjct: 91 SVLCRFAPYMRYIEKKLNEVLPATFYIHSGKGLEELNKWVIES-KFEGVCTESDYEAFDA 149 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ V E M L +P+ LI+ + YIKT++ S+ G MR +G A Sbjct: 150 SQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEA 199 >UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA polymerase - Sugarcane striate mosaic associated virus Length = 1937 Score = 50.0 bits (114), Expect = 8e-05 Identities = 31/112 (27%), Positives = 53/112 (47%) Frame = +1 Query: 262 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 441 H ++ F P +Y P N +++ G+ L+ + ++ + +DY AF Sbjct: 1668 HHVVLARFSPWVRYIEKKLVSSLPDNYYIHSGKNFDQLNAWVKANNFVGECTE-SDYEAF 1726 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 D SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TG A Sbjct: 1727 DASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEA 1778 >UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase - Garlic latent virus Length = 1924 Score = 48.0 bits (109), Expect = 3e-04 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH-VC--NDYSA 438 ++++ F P +Y + P +++ G+ +L+++ + + H C +DY A Sbjct: 1659 SVLVRFAPYMRYIEKKVLEVLPKQYYIHSGKGLDELNQWVCDN----KFHGACTESDYEA 1714 Query: 439 FDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 FD SQ + E ME L +P LI+ + YIKT++ + G L MR +G A Sbjct: 1715 FDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEA 1767 Score = 34.3 bits (75), Expect = 4.2 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Frame = +2 Query: 41 KVPFQP----DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 +VP +P DL E ++ E ++S K+ A+I+ +ANRS DW +FSK+Q Sbjct: 1581 RVPLKPHHRHDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLADVGLVFSKSQ 1635 >UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting-associated virus|Rep: Replicase - Rupestris stem pitting associated virus-1 Length = 2161 Score = 47.2 bits (107), Expect = 6e-04 Identities = 31/110 (28%), Positives = 55/110 (50%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 A+++ F P +Y + PN +++ G+ +L+ + + I +DY AFD Sbjct: 1898 AVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTR-GFTGICTESDYEAFDA 1956 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 SQ + E + M+ L +P LI + +IK ++ S+ G + MR TG A Sbjct: 1957 SQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEA 2006 >UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase - Phlox virus S Length = 1990 Score = 47.2 bits (107), Expect = 6e-04 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQH 456 F P +Y + P +V+ G+ +L+ + +K VC +DY AFD SQ Sbjct: 1730 FAPYMRYIEKKLHEVLPERYYVHSGKGLEELNSWV---IKGGFGGVCTESDYEAFDASQD 1786 Query: 457 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 V E ME L +P LI+ + +IKT++ S+ G MR +G A Sbjct: 1787 QYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEA 1833 >UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA replicase - Cherry virus A Length = 2342 Score = 46.8 bits (106), Expect = 7e-04 Identities = 27/107 (25%), Positives = 53/107 (49%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 I+ F P+ +Y ++ P N +++ + +L R+ S+ + +DY A+D S Sbjct: 1372 ILCKFAPLNRYIEKKVTQSLPGNFYIHQKKNFDELERWVKSY-NFSGVCTESDYKAYDAS 1430 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 Q + E K + L+ + LI+ + Y+K ++ + G L +R TG Sbjct: 1431 QDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTG 1477 >UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus symptomless virus|Rep: RNA-dependent RNA polymerase - Narcissus symptomless virus Length = 1871 Score = 46.8 bits (106), Expect = 7e-04 Identities = 28/105 (26%), Positives = 51/105 (48%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGE 462 F P +Y + P +++ G+ DL+ + ++ + +DY AFD SQ Sbjct: 1614 FAPYVRYIEKKLNDALPAKYYIHSGKNIDDLNDWVKAN-NFSGVCTESDYEAFDASQDHY 1672 Query: 463 AVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 + E M+ L +P L++ + +IKT++ S+ G MR +G A Sbjct: 1673 IMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEA 1717 >UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep: RNA replication protein (ORF 1 protein) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Chrysanthemum virus B (CVB) Length = 260 Score = 46.4 bits (105), Expect = 0.001 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +1 Query: 331 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQHGEAVVLERKKMERLSI 504 P +++ G+ +L+ + +K +C +DY AFD SQ V E ME L + Sbjct: 15 PSRFYIHSGKGLEELNEWV---IKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGL 71 Query: 505 PSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 P LI+ + +IK ++ S+ G MR +G A Sbjct: 72 PRDLIEDYAFIKCHLGSKLGNFAIMRFSGEA 102 >UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Flexiviridae|Rep: RNA-dependent RNA polymerase - Hippeastrum latent virus Length = 1971 Score = 45.6 bits (103), Expect = 0.002 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Frame = +1 Query: 283 FGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQH 456 F P +Y + P +++ G+ +L + + VC +DY AFD SQ Sbjct: 1711 FAPYMRYIEKKLHQALPDKFYIHSGKGLEELDCWVKKYRFD---GVCTESDYEAFDASQD 1767 Query: 457 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGRA 597 V E M L +P L+ + YIKT++ S+ G MR +G A Sbjct: 1768 QYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEA 1814 >UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep: 158kDa replicase - Botrytis virus X Length = 1413 Score = 43.2 bits (97), Expect = 0.009 Identities = 27/107 (25%), Positives = 49/107 (45%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 +VL+ + Y R + +P N+F+ +T + F + +DY+ +D+S Sbjct: 1098 VVLLTTTLALYLRACRNSHQPDNVFIMCEKTSNQFNDFVKDWNFERDNYT-SDYTQYDKS 1156 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 Q G + E +K +P ++D + IKT+ L MRL+G Sbjct: 1157 QDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSG 1203 Score = 38.3 bits (85), Expect = 0.26 Identities = 23/59 (38%), Positives = 31/59 (52%) Frame = +2 Query: 20 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 + + P +PF P L+ E E + LS KT A I ANR DPD+ V +F K+Q Sbjct: 1016 FMKVPKDPMPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQ 1073 >UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine virus A|Rep: RNA-dependent RNA polymerase - Grapevine virus A Length = 1707 Score = 42.3 bits (95), Expect = 0.016 Identities = 28/108 (25%), Positives = 53/108 (49%) Frame = +1 Query: 268 AIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQ 447 +++ FGPI + + P N+ +Y + DL ++A + ++ + + +DY AFD+ Sbjct: 1423 SVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKWAKTWVESM-MGTDSDYEAFDR 1481 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 SQ + + LE + + P LI + +K + G L MR +G Sbjct: 1482 SQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSG 1529 >UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp; n=1; Indian citrus ringspot virus|Rep: Putative RNA-dependent RNA polymerase RdRp - Indian citrus ringspot virus Length = 1658 Score = 41.5 bits (93), Expect = 0.027 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Frame = +1 Query: 274 VLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK-PLQIHVCNDYSAFDQS 450 V+++G + +Y R P ++ + P +S + + Q H ND+ AFDQS Sbjct: 1392 VMLYGTMARYMRRIRISLCPSHIMINCETNPTQISSWVRENWDFSGQSHE-NDFEAFDQS 1450 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 Q + E K + SIP +I + ++K + G + MRL+G Sbjct: 1451 QDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSG 1497 >UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Replicase - Mint virus 2 Length = 500 Score = 38.3 bits (85), Expect = 0.26 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = +1 Query: 268 AIVLIFGP-IKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFD 444 A++ FGP +++ ++ ++ N+ +Y + DL ++ ++ + I +DY AFD Sbjct: 213 AVLCRFGPQLRRTEKALRAQ-LGDNVMIYSQKNYTDLDNWSRLYVDGM-IGTDSDYEAFD 270 Query: 445 QSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 +SQ + + E + ++ P LI+ + +K + G L MR +G Sbjct: 271 RSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSG 319 >UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Trichovirus|Rep: RNA-directed RNA polymerase - Apple chlorotic leaf spot virus (isolate apple) (ACLSV) Length = 1885 Score = 35.1 bits (77), Expect = 2.4 Identities = 24/107 (22%), Positives = 47/107 (43%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 I++ F P +Y + + P N +++ + +L FA + V +DY+AFD S Sbjct: 1589 ILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFAKRFSNG-SMCVESDYTAFDVS 1647 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 Q + E + ++ ++ + +K + + G MR TG Sbjct: 1648 QDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGFAIMRFTG 1694 Score = 34.3 bits (75), Expect = 4.2 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = +2 Query: 8 LCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFS 187 L + + RH K L +C E ++LS K+ A I A++ RSD DW + +F Sbjct: 1503 LAKVFLRHVPIKCGRDQRLLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFM 1561 Query: 188 KTQ 196 K+Q Sbjct: 1562 KSQ 1564 >UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein) (ORF1 polyprotein) [Contains: Putative RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat protein]; n=18; Apple stem grooving virus|Rep: Genome polyprotein (241 kDa polyprotein) (ORF1 polyprotein) [Contains: Putative RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem grooving virus (strain Korea) (ASGV) Length = 2105 Score = 35.1 bits (77), Expect = 2.4 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQ-IHVCNDYSAFDQ 447 ++ FGP+ + + + +++ G+ + L F + + + + +DY+AFD Sbjct: 1311 VLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDS 1370 Query: 448 SQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTG 591 SQ + E ++ L + + +K + + G L MR TG Sbjct: 1371 SQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTG 1418 >UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep: Polyprotein - Blackberry virus X Length = 244 Score = 34.7 bits (76), Expect = 3.2 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +2 Query: 77 INLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 +++NE+ + K +A + N+ RSDPDW+ + +F K Q Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210 >UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14; Bacillus|Rep: Glycosyl transferase, putative - Bacillus anthracis Length = 392 Score = 34.7 bits (76), Expect = 3.2 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +2 Query: 29 HPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKIN 208 HPN ++PFQPD E + + K + +Q N+ D YT+ R F Sbjct: 140 HPNAEIPFQPDEISEQLLYRMEHEFGVKPKNNLQFMHNKGDITLVYTS-RYFQPNSDLFG 198 Query: 209 EGSIF-GPWESMPDISLECMMPL 274 E +IF GP S ++E + L Sbjct: 199 ENNIFIGPSISKRKTNVEFPLEL 221 >UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7; Crinivirus|Rep: RNA-dependent RNA polymerase - Lettuce infectious yellows virus Length = 476 Score = 34.3 bits (75), Expect = 4.2 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +2 Query: 536 SKPTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITST 712 +K T V+L+L G P T+ NT + ++ S YDI +LVSGDDSL I S Sbjct: 284 AKATCGVDLEL-GTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSL-IFSR 341 Query: 713 SCSPRLGRRFSTPFSHIQKXVVKN 784 P + + F K + K+ Sbjct: 342 KHLPNKTQEINKNFGMEAKYIEKS 365 >UniRef50_Q4PGK6 Cluster: Putative uncharacterized protein; n=1; Ustilago maydis|Rep: Putative uncharacterized protein - Ustilago maydis (Smut fungus) Length = 1657 Score = 34.3 bits (75), Expect = 4.2 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +3 Query: 477 TEENGAAFHSISSYRPPLLHQNQHYKSIWTFDLHAPYRASPALMTTTRITILPSFTASTT 656 T+++ A+ HS SS R P + + K + FD + RAS + + S ASTT Sbjct: 1230 TDDDNASVHSNSSNRQPY-RELRASKKVHGFDSSSADRASSGFSSKLTSAVSVSTAASTT 1288 Query: 657 SPRKLS-WS 680 SP S WS Sbjct: 1289 SPGDASGWS 1297 >UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14; Crinivirus|Rep: ORF 1a/1b fusion polyprotein - Beet pseudo-yellows virus Length = 2441 Score = 33.9 bits (74), Expect = 5.5 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +2 Query: 590 GEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSLXITSTS 715 G P T+ NT + ++ S YD+ +LVSGDDSL + S Sbjct: 2266 GSPNTWLSNTLVTLGIVLSTYDLRDIDLLLVSGDDSLIFSRKS 2308 >UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep: Replicase - Lolium latent virus Length = 440 Score = 33.9 bits (74), Expect = 5.5 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +2 Query: 32 PNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 196 P+ VPF DL+ E S +K++ I+ NR DPDW+ + ++ K Q Sbjct: 369 PDEPVPFIRDLW-EQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQDERMFVYLKAQ 422 >UniRef50_A3I102 Cluster: Putative uncharacterized protein; n=1; Algoriphagus sp. PR1|Rep: Putative uncharacterized protein - Algoriphagus sp. PR1 Length = 522 Score = 33.9 bits (74), Expect = 5.5 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +2 Query: 605 YDDNTDYNIAVIYSEYDITTQTVLVSGDDS-LXITSTSCSPRLGRRFSTPFSHIQKXVVK 781 YD+N N +IY + +I ++TV + DS L + S + SP + + + + ++ ++ Sbjct: 29 YDENFKLNSRLIYDQVEILSETVRIGKKDSVLSLLSPNLSPAISLKGTEVYQYLSPWILV 88 Query: 782 NG 787 G Sbjct: 89 KG 90 >UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1; n=1; Hyperthermus butylicus DSM 5456|Rep: NADH-ubiquinone oxidoreductase chain 1 - Hyperthermus butylicus (strain DSM 5456 / JCM 9403) Length = 262 Score = 33.9 bits (74), Expect = 5.5 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 542 PTLQVNLDL*PACALPGEPGTYDDNTDYNIAVIYSEYDITTQTVLVSG 685 P L + + P +PG PG Y + Y++ + Y+ +T+ +LV G Sbjct: 20 PILAFTIAVLPLTVIPGGPGVYGFTSPYSMLIAYALLSLTSIVILVMG 67 >UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7; Strawberry pallidosis associated virus|Rep: ORF 1a/1b fusion polyprotein - Strawberry pallidosis associated virus Length = 2451 Score = 33.5 bits (73), Expect = 7.3 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +2 Query: 590 GEPGTYDDNTDYNIAVIYSEYDI-TTQTVLVSGDDSL 697 G P T+ NT +A+I + YD+ +LVSGDDSL Sbjct: 2276 GSPNTWLSNTLVTLAMILTHYDLDDIDLLLVSGDDSL 2312 >UniRef50_Q3JM69 Cluster: YO185-like protein; n=2; Burkholderia pseudomallei|Rep: YO185-like protein - Burkholderia pseudomallei (strain 1710b) Length = 1528 Score = 33.5 bits (73), Expect = 7.3 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +2 Query: 155 DWRYTAVRIFSKTQHKINEGSIFGPWESMPDISLECMMP 271 DWRY A + + H + +G I+GPW+ +P SL + P Sbjct: 419 DWRYQAPQ---RDPHALPDGIIYGPWKGLP--SLPALQP 452 >UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis Length = 3976 Score = 33.5 bits (73), Expect = 7.3 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 543 GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 442 G + AME K+ WN F+P++D G+++L V Sbjct: 950 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 983 >UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep: Non-structural polyprotein - Hepatitis E virus (strain Myanmar) (HEV) Length = 1693 Score = 33.5 bits (73), Expect = 7.3 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +2 Query: 590 GEPGTYDDNTDYNIAVIYSEYDITT-QTVLVSGDDSLXITS 709 GEPGT NT +N+AVI YD Q GDDS+ + S Sbjct: 1518 GEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCS 1558 >UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep: Replicase - White ash mosaic virus Length = 954 Score = 33.1 bits (72), Expect = 9.6 Identities = 20/90 (22%), Positives = 40/90 (44%) Frame = +1 Query: 271 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 450 +VL+F + Y R K +P +F+ + P + F + +DY +DQS Sbjct: 865 VVLLFITMALYLRKQRVKHQPDYVFIMCEENPSAFNEFIQGWEFSTPSYT-SDYKQYDQS 923 Query: 451 QHGEAVVLERKKMERLSIPSHLIDLHCYIK 540 Q + E +K + +P + D + +++ Sbjct: 924 QDAVFLNFELRKAKHFGVPKFIRDCYKFLQ 953 >UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E virus|Rep: Nonstructural protein - Hepatitis E virus Length = 1717 Score = 33.1 bits (72), Expect = 9.6 Identities = 24/76 (31%), Positives = 37/76 (48%) Frame = +1 Query: 331 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 510 PPN+F YG + A S + ND+S FD +Q+ ++ LE ME +P Sbjct: 1454 PPNIF-YGDAFEESVFSAAISGAGSSMVFE-NDFSEFDSTQNNFSLGLECVIMEECGMPQ 1511 Query: 511 HLIDLHCYIKTNITSQ 558 LI L+ +++ T Q Sbjct: 1512 WLIRLYHLVRSAWTLQ 1527 >UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: T7N9.5 - Arabidopsis thaliana (Mouse-ear cress) Length = 1436 Score = 33.1 bits (72), Expect = 9.6 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 442 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 567 D+S V E K + +PSHL D HCY T T++ P Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 851,555,924 Number of Sequences: 1657284 Number of extensions: 17610518 Number of successful extensions: 46715 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 44684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 46668 length of database: 575,637,011 effective HSP length: 100 effective length of database: 409,908,611 effective search space used: 79112361923 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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