Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P21
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    27   3.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   4.7  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   4.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.2  

>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 21  INDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKL 122
           IND+ ++K L  P  +LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 367 YDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLH 528
           +D  +  SS+   + IH  N++     S+H E   L   K   +S+P   ++LH
Sbjct: 195 WDTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLH 248


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 96  HSFPTRLKLSSKRTQIVRIP 155
           H  P R++LSS+  QI RIP
Sbjct: 5   HGTPQRIQLSSRAIQICRIP 24


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 540 FDVAMEVYKMRWNGKPL-HFLPFQDN 466
           F VAME+ K+R +GK L   L + DN
Sbjct: 358 FAVAMEIIKLRLSGKSLASILAYDDN 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,934
Number of Sequences: 5004
Number of extensions: 73372
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)