Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P21
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.043
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     33   0.23 
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)                      28   8.7  

>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +3

Query: 516  YRPPLLHQNQHYKSIWTFDLHAPYRASPALMTTTRITILPSFTASTTSPRKLSWSQ 683
            + PP + Q  H  S++TFD   PY+ + ++++ T     PSF  ST+  + +S+SQ
Sbjct: 945  FSPPTIPQ--HTSSVFTFDRPVPYQQT-SMLSPTLSPASPSFLHSTSLKQSISYSQ 997


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 543 GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 442
           G + AME  K+ WN     F+P++D G+++L  V
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 828


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 33   PIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQ 188
            P  K L    S L  S++ S     T +       Q+  IPTGG  LS YF+
Sbjct: 1082 PDAKVLPPIASFLKPSVNGSMQFHTTNVTSKDVTIQVTLIPTGGKELSVYFR 1133


>SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 576 AGQRSKLTCNVGFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 442
           +G   KL      + AM+     WNG    F+ ++D G+++L  V
Sbjct: 117 SGPLLKLNAEEIEEEAMDKMHQEWNGMEFAFVEYKDTGISILSAV 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,006,298
Number of Sequences: 59808
Number of extensions: 588776
Number of successful extensions: 1420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)