Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P21
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23575.1 68418.m02766 transmembrane protein, putative similar...    31   0.77 
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...    31   1.0  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    30   1.8  
At1g66235.1 68414.m07518 expressed protein ; expression supporte...    29   4.1  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    29   5.4  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    28   9.5  

>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 348 VWRPNSIRSLSVCFVPSETITNS 416
           VW P SIR+ S+ + PSET+ N+
Sbjct: 107 VWTPESIRTKSLTYYPSETLQNN 129


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 348 VWRPNSIRSLSVCFVPSETITNS 416
           VW+P S R+LS+ + PSE + N+
Sbjct: 105 VWKPESTRTLSMTYYPSEALKNN 127


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -2

Query: 249 MSGMLSQGPKIEPSLILC*VFENMRTAVYRQSGSERFA 136
           +S +L + PKIE  LI     +N + A +RQSG++RF+
Sbjct: 73  LSSLLEKSPKIERVLI---DDDNAKMAQFRQSGTDRFS 107


>At1g66235.1 68414.m07518 expressed protein ; expression supported
           by MPSS
          Length = 265

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 468 CLGTEENGAAFHSISSYRPPLLHQNQHYKSIWTFD 572
           C     +GA+   I +    +L Q++H+KS W FD
Sbjct: 63  CENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFD 97


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 57  PTSSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLL 173
           P++ L  S S   + +PTRLK    R   V++ TGG LL
Sbjct: 77  PSTGLGQSYSFRFNKYPTRLKYELYRDS-VQLITGGILL 114


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 32  PNHKVPFQPDLFVECINLNEYSQL 103
           PNH+ PFQ D F+E +    Y Q+
Sbjct: 267 PNHQYPFQDDPFMEMLMEYPYEQV 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,305
Number of Sequences: 28952
Number of extensions: 398929
Number of successful extensions: 1074
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)