Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P18
         (861 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    30   0.027
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.33 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.44 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.58 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.58 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.77 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   5.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = -3

Query: 241 PTQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHERPTGCPT- 65
           PT+V  +  S A  PR   A P  +P  S +A     P+ +I   +PQ +  RPTG  T 
Sbjct: 201 PTKVKASKASPAAAPR-SVATPTGIPTPSTSASP---PTVNIKKESPQMQSYRPTGNITP 256

Query: 64  RGRGTS---TAPRPLSGRL 17
            G  TS   T P P +  L
Sbjct: 257 HGSNTSSLITTPSPSASPL 275


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 193  RDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHERPTGCPTRGRGTSTAPRPLSG 23
            +DG  PDPV   S   GS    S S G P   +    P+G    G   S +P P++G
Sbjct: 1080 KDGVIPDPVALKSAQQGSS---SSSEGVPLKGTAVPPPSGSSGPGSTGSKSP-PVAG 1132


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -2

Query: 746 GKQRAMXXRC--PGRVHXCDTSSSAQPPI 666
           GK R +   C  P R + CD    A PPI
Sbjct: 66  GKNRGVTEGCDYPWRSNYCDNKQQANPPI 94



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/57 (26%), Positives = 19/57 (33%)
 Frame = -3

Query: 253 CAAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHER 83
           C   PT+     PS  PPP  +      +PQ +      N   P    P P     R
Sbjct: 199 CVVPPTEDCDV-PSTIPPPPPEEDDDSNIPQNNPKNKQHNFNLPPGAIPVPDKNRPR 254


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 24/83 (28%), Positives = 31/83 (37%)
 Frame = -3

Query: 259 PGCAAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHERP 80
           PG AA P   H   P   PPP   G  P  +   S  AGS     P +  P P  ++  P
Sbjct: 120 PG-AALPFFCHNGDPLSQPPPAHMGIPPYQLD--SKTAGSMGLTRPPM-YPFPAGQYPYP 175

Query: 79  TGCPTRGRGTSTAPRPLSGRLQP 11
              P   +  ++   P    L P
Sbjct: 176 ILSPEMSQVAASWHTPSMYPLSP 198



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 537 PRGVGQSPRPRLEHGPPRMGLPRPQLTLGDTRHAP 433
           P   G SP P      P +  P P+  L D  H P
Sbjct: 231 PPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 265


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 24/83 (28%), Positives = 31/83 (37%)
 Frame = -3

Query: 259 PGCAAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQSEHERP 80
           PG AA P   H   P   PPP   G  P  +   S  AGS     P +  P P  ++  P
Sbjct: 12  PG-AALPFFCHNGDPLSQPPPAHMGIPPYQLD--SKTAGSMGLTRPPM-YPFPAGQYPYP 67

Query: 79  TGCPTRGRGTSTAPRPLSGRLQP 11
              P   +  ++   P    L P
Sbjct: 68  ILSPEMSQVAASWHTPSMYPLSP 90



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 537 PRGVGQSPRPRLEHGPPRMGLPRPQLTLGDTRHAP 433
           P   G SP P      P +  P P+  L D  H P
Sbjct: 123 PPHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKP 157


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 217 PSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSP 122
           P+I+  PR + A+P   P   G+   +  P P
Sbjct: 402 PTISTTPRPEWARPPSTPSADGSKPVQTTPKP 433


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 226 RTGPSIAPPPRRDGAQPDPVP 164
           R GP I   P+ + A+P+ +P
Sbjct: 335 RRGPKIKTQPKAEEAKPETLP 355


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 108 GPPIDGDGRFFEPAAPEYWGTGSG 179
           GPP DG G    P+  +    G+G
Sbjct: 353 GPPQDGAGNLISPSINDDGTCGNG 376


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 478 PSAPAAHSRGHAPRPEH 428
           P+ P  H+  H P P H
Sbjct: 334 PNLPLTHNIAHNPYPSH 350


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
 Frame = -3

Query: 244 QPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGPAPQS-----EHERP 80
           +P  + +  PS +     DG Q  P+P     +   +   P    PAP +     E    
Sbjct: 47  RPQAILQVRPSTSAAADVDGWQVTPLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPGSS 106

Query: 79  TGCPTRGRGTSTAPRPLS 26
           T   T G   ++ P P++
Sbjct: 107 TTSATSGAVMASPPMPIT 124


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 152 SSRLKEPAVPINRGTSSAK*ARKAHRLSNTRP 57
           S  +K    P  RGT  A  A + ++LSN  P
Sbjct: 21  SMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSP 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,501
Number of Sequences: 336
Number of extensions: 5061
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)