Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_P18
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 124 PSIGGPAPQ-SEHERPTGCPTRGRGTSTAPRPLSG 23
           PS G P PQ S H+ P   P RG   + +  P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQ-APQRGSPPNPSQGPPPG 49



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 592 HDSPSHQRPGKPPRRSVAPTWGWP 521
           H SP   + G PP  S  P  G P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -3

Query: 238 TQVHRTGPSIAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGGP--APQSEH 89
           TQ  +   S AP P+    Q    PQ          P P  GGP  AP S++
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP--GGPPGAPPSQN 59



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 625 PAPDER*DVPRHDSPSHQRPGKPP 554
           P+P +    P+  SP +   G PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 591 WRGTSHLSSGAGADRARMLREVPAP 665
           W  TSH +S     + + + +VP P
Sbjct: 32  WTATSHEASAPAEGKFKTVSKVPGP 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
 Frame = -3

Query: 259  PGCAAQPTQVHRTGPS------IAPPPRRDGAQPDPVPQYSGAAGSKNRPSPSIGG 110
            PG   Q  Q   T PS        PP   +  Q     Q    +   N+P P+ GG
Sbjct: 975  PGGVVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGG 1030


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 629 STCTRRKVRRPSPRFTQSSKTG*TASTVRSPHVGLANRLDHDSSTDRREWAFRARSSLS 453
           S  +R  + R    + Q +K      +++   VGL N L   S  +  E   + + SLS
Sbjct: 491 SKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLS 549


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
 Frame = -2

Query: 776 PGHGVHLPKRGKQRAMXXRCPGRVHXCDT-----SSSAQPPIRRRYFPKHPCPVSTCTRR 612
           PGHG    K+ +  +    C G    C T     S  +Q P+ ++   K     ST T  
Sbjct: 273 PGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQK-LEKPVLSSSTTTTS 331

Query: 611 KVRRPSPRFTQSSKTG*TASTVRSPH 534
            +        ++     T S   SPH
Sbjct: 332 PMTSTKSTIVRNHLNS-TCSVTNSPH 356


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 63  RVGQPVGLSCSLCGAGPP 116
           RVG  V + C + G  PP
Sbjct: 323 RVGDNVEIKCDVTGTPPP 340


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 108 GPPIDGDGRFFEPA 149
           GPP DG+G    P+
Sbjct: 355 GPPNDGNGNILSPS 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,909
Number of Sequences: 438
Number of extensions: 6561
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)